On Thu, Dec 15, 2011 at 10:13 AM, Siemen Henk Sikkema
s.h.sikk...@gmail.com wrote:
Hi All,
Thanks for the responses! I just got around to trying the solution by Joe
Cruz. This did the trick for xls files, so that's the good news! The
slightly less good news is that the same does not hold for
Dear Galaxy developers,
I have installed a Galaxy local instance on our university's server and I am
going to use it to analyze data also uploaded on the same server. Nevertheless
the access to the server (and the data) is limited only to those involved with
the project so making public
Dear all,
It has become a convention that each tool/wrapper in
Galaxy includes citation instructions in their help text
(although not all the tools do this - I think they should).
It occurred to me this could be formalised, with explicit
markup in the tool XML file, embedding the citation
(at
On Thu, Dec 15, 2011 at 6:16 AM, Peter Cock p.j.a.c...@googlemail.comwrote:
Dear all,
It has become a convention that each tool/wrapper in
Galaxy includes citation instructions in their help text
(although not all the tools do this - I think they should).
It occurred to me this could be
On Mon, Dec 12, 2011 at 4:09 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hi all,
Is there any official guidance on relocating a working
Galaxy installation?
Ours is currently up and running using PostreSQL, with
everything installed under /opt/galaxy-dist
I want to move this under
I'm fairly far down the implementation path for supporting inclusion of new
data types in tool shed repositories. Unless I get steered into another
direction, I should have this documented in early January.
On Dec 15, 2011, at 5:26 AM, Peter Cock wrote:
On Thu, Dec 15, 2011 at 10:13 AM,
Yes, I was just providing the status of support for those niche formats.
On Dec 15, 2011, at 8:41 AM, Peter Cock wrote:
On Thu, Dec 15, 2011 at 12:12 PM, Greg Von Kuster g...@bx.psu.edu wrote:
I'm fairly far down the implementation path for supporting inclusion of
new data types in tool shed
Hi Paul, Sean,
On Thu, Dec 15, 2011 at 3:09 PM, Paul Gordon gord...@ucalgary.ca wrote:
Excellent idea, and the BibTeX comment makes sense too...
I'm glad there is enthusiasm for the basic idea :)
However, while I am a LaTeX and BibTeX user and fan, I
really don't think BibTex is an appropriate
Dear Galaxy developers,
I have installed a Galaxy local instance on our university's server and I am
going to use it to analyze data also uploaded on the same server. Nevertheless
the access to the server (and the data) is limited only to those involved with
the project so making public urls
Peter / Paul -
I propose to take this a step farther. How about developing a galaxy tool that
uses a history/workflow to write a draft of your methods section using
principles from Natural Language Generation
[http://en.wikipedia.org/wiki/Natural_language_generation], with relevant
citations
+1 for me :-)
Alex
Van: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu]
namens Casey Bergman [casey.berg...@manchester.ac.uk]
Verzonden: donderdag 15 december 2011 20:10
Aan: Peter Cock; Sean Davis
CC: galaxy-dev@lists.bx.psu.edu
I recently installed galaxy program on our Linux server and it is going to be
used for analyzing high-throuput sequencing data. I tried to upload a
dataset (a bed format file) from local computer to galaxy server, but no
success. The message of Dataset is uploading stays forever. The
Hi,
I am having the same issue today. It was working a few days ago,
but now never finish uploading.
Luciano
On Dec 15, 2011, at 3:05 PM, weihong yan wrote:
I recently installed galaxy program on our Linux server and it is
going to be used for analyzing high-throuput sequencing
Galaxy was configured with Apache as proxy server. The uploaded file size is
very small. The message from paster.log related with it is
POST /False?nginx_redir=/tool_runner/index HTTP/1.1 200 -
http://galaxy.mcdb.ucla.edu/tool_runner?tool_id=upload1; Mozilla/5.0
(Macintosh; U; Intel Mac OS X
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