Re: [galaxy-dev] Cannot update Cloudman from a clean install on EC2?

2013-03-21 Thread Dannon Baker
Hey Brian, Sorry for the delayed response on this one, what you're seeing is a consequence of how Galaxy's tool migration scripts work -- all you should need to do is click restart one more time in the cloudman admin UI. -Dannon On Thu, Mar 14, 2013 at 10:56 PM, Brian Lin brian@tufts.edu

[galaxy-dev] Galaxy dont work on my Bio-Linux

2013-03-21 Thread BrozPetr
Hello, please could you help me, how to run galaxy directly from my computer? I am using Bio-Linux (ubuntu distribution) and there is GALAXY already install. When I try to open it, it is state that:  The Galaxy server doesn't seem to be running on your machine. You may need to start it

Re: [galaxy-dev] customtrack visualisation

2013-03-21 Thread Carl Eberhard
Hello, Shaun Which revision of galaxy-central or galaxy-dist are you using in your local install? Thanks, Carl On Wed, Mar 20, 2013 at 12:52 PM, Shaun Webb swe...@staffmail.ed.ac.ukwrote: Hi Jen, I should have said this is in my own install. It works fine at the main server. I only

Re: [galaxy-dev] Displaying track into UCSC (update)

2013-03-21 Thread Daniel Blankenberg
Hi Julien, This was fixed in changeset 6cd4058d7b32 (https://bitbucket.org/galaxy/galaxy-dist/commits/6cd4058d7b32/). Can you update your Galaxy instance and see if the issue is resolved for you? Thanks for using Galaxy, Dan On Mar 20, 2013, at 4:53 AM, Julien SEILER wrote: Hello Carl,

Re: [galaxy-dev] workflow parameters

2013-03-21 Thread Daniel Blankenberg
Hi Brad, Thanks for reporting this issue. I have confirmed that there is an issue with workflow parameter substitution not working properly when inside of Grouping constructs (such as the paired end/single end conditional). We've opened a Trello card (https://trello.com/c/DvAea8kr) and

Re: [galaxy-dev] Cloudman on openstack

2013-03-21 Thread Dave Clements
Hi Zeeshan, There has actually been quite a bit of work on supporting CloudMan on OpenStack. The whole NECTAR deployment in Australia is based on OpenStack. What there has not been, as far as I know, is documentation about it. I suggest creating a Trello card on this (see