Hi Nate,
Thanks for the suggestion! Unfortunately, it still failed :(
I got the following error message in proftp log:
2013-08-09 08:32:41,777 mod_sql/4.3[32384]: enteringpostgres
cmd_escapestring
2013-08-09 08:32:41,777 mod_sql/4.3[32384]: enteringpostgres cmd_open
2013-08-09
Peter,
The automated build prior to this email was executed incorrectly. I've
resolved that status, and the current test results look correct.
--Dave B.
On 8/8/13 10:30:37.000, Peter Cock wrote:
On Thu, Aug 1, 2013 at 12:11 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
Hi Dave,
The
On Aug 9, 2013, at 2:38 AM, Leon Mei wrote:
Hi Nate,
Thanks for the suggestion! Unfortunately, it still failed :(
I got the following error message in proftp log:
2013-08-09 08:32:41,777 mod_sql/4.3[32384]: enteringpostgres
cmd_escapestring
2013-08-09 08:32:41,777
For the moment, the best solution is to disable PBKDF2 in Galaxy if
you are also using FTP. That is how Galaxy main is currently
configured.
--
James Taylor, Assistant Professor, Biology/CS, Emory University
On Fri, Aug 9, 2013 at 10:01 AM, Nate Coraor n...@bx.psu.edu wrote:
On Aug 9, 2013, at
Hello everyone,
Firstly, I am beginner. I am a new Galaxy user that installed the Galaxy
locally into my ubuntu (13.04) installed computer. Everything is working
perfectly right now. Galaxy is really awesome.
To learn the basics, I started the basic tutorial (Galaxy101
Hi Can,
something went wrong with your join utility part of your Ubuntu
installation.
Can you translate that for us?
'join (GNU coreutils) 8.20\nCopyright (C) 2012 Free Software Foundation,
Inc.\nLisans GPLv3+: GNU GPL s\xc3\xbcr\xc3\xbcm 3 ve sonras\xc4\xb1
Hi Dave,
Progress: I can now see the test failures which suggest that the
underlying binaries did not get installed properly. I guess this
either means:
(a) the dependency install failed but the Tool Shed doesn't say
this (my hunch as recently the NCBI BLAST+ tools had stopped
compiling on the
Hi Nate/James,
Thanks! Where should I look into to disable PBKDF2 in the Galaxy code?
Cheers,
Leon
On Fri, Aug 9, 2013 at 4:28 PM, James Taylor ja...@jamestaylor.org wrote:
For the moment, the best solution is to disable PBKDF2 in Galaxy if
you are also using FTP. That is how Galaxy main
Dear Nate,
Adding su - galaxy as the first line of the pre-start script seems to
work reasonably well. Also it looks like the line that sets the egg cache
is not working properly. My egg cache ends up being
/tmp/${SERVER_NAME}_egg/ but things still seem to be working so I've
changed that part
I previously tried to get this to work, too. After a lot of trial-and-error, I
gave up because proFTPd always calculated a different string after salting and
hashing the password with PBKDF2 than what is stored in the database. I'm sure
that it extracted the correct salt and password, but
Hello Ravpreet,
It is not working for me either. I posted a detail reply later.
Best Regards,
Anatoly
From: Ravpreet Setia [mailto:ravpreet.se...@oicr.on.ca]
Sent: Thursday, August 08, 2013 1:37 PM
To: Dannon Baker; Ulyanov_Anatoly
Cc: galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev]
On Thu, Aug 8, 2013 at 1:31 PM, Nate Coraor n...@bx.psu.edu wrote:
On Aug 5, 2013, at 6:23 PM, Rodolfo Aramayo wrote:
Hi,
I have a 80 core/1TB RAM Dell server.
In order improve Galaxy performance I modified the universe_wsgi.ini
file so as to improve the Scaling and Load Balancing
as
On Aug 9, 2013, at 1:16 PM, Rodolfo Aramayo wrote:
Dear Nate,
Thanks
Just to be sure I understand this correctly
I now have in my 'universe' file the following:
#
# HTTP Server
--
# Configuration of the internal
It worked like a charm
Thanks
--R
On Fri, Aug 9, 2013 at 12:32 PM, Nate Coraor n...@bx.psu.edu wrote:
On Aug 9, 2013, at 1:16 PM, Rodolfo Aramayo wrote:
Dear Nate,
Thanks
Just to be sure I understand this correctly
I now have in my 'universe' file the following:
#
# HTTP
Hello dev-team,
I am experiencing a strange problem with my production instance, after I
carefully merged remote changes from galaxy-dist release to my code
repository. While restarting, It fails to load the the page properly, the
message from log file stating that serving on 0.0.0.0:8080
Here
Hi,
Regarding the error I experienced with
[galaxy-dev] Error running oasesoptimizer rev. 53e887dda799
(konradpaszkiewicz) on Galaxy fd4113962c32+ (stable)
Two things:
FIRST
The error I reported, in short, it was my fault as I failed to to set up the:
cmdline =
Hi Vipin,
This has been fixed in the stable branch of galaxy-central
https://bitbucket.org/galaxy/galaxy-central/commits/cd6fec2f5cba but has not
made it on to galaxy-dist yet.
Thanks for using Galaxy,
Dan
On Aug 9, 2013, at 2:33 PM, Vipin TS wrote:
Hello dev-team,
I am experiencing
Hi Dan,
Thanks for the information, I have updated this to my repository manually.
Now I can invoke the page but the frames were not loaded correctly.
The log message as follows:
/codebase/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/sql/expression.py:1927:
SAWarning: The
Hi Vipin,
Can you try deleting the contents of your compiled templates directory (i.e.
/codebase/database/compiled_templates/*)?
Thanks for using Galaxy,
Dan
On Aug 9, 2013, at 3:22 PM, Vipin TS wrote:
Hi Dan,
Thanks for the information, I have updated this to my repository manually.
Hi Dan,
I deleted the
contents from
/codebase/database/complied_templates/* and restarted the instance, still
no luck. Sorry.
Thanks, Vipin
On Fri, Aug 9, 2013 at 3:43 PM, Daniel Blankenberg d...@bx.psu.edu wrote:
Hi Vipin,
Can you try deleting the contents of your compiled templates
Hi Vipin,
Strange, are you running the latest galaxy-dist? That line doesn't exist in
e.g.
https://bitbucket.org/galaxy/galaxy-dist/src/ebe87051fadff5750ec226490b31e49bdd68b070/templates/webapps/galaxy/root/history.mako?at=default.
Can you compare your file to the file in the repository? What
--/Vipin
-- Forwarded message --
From: Vipin TS vipin...@gmail.com
Date: Fri, Aug 9, 2013 at 5:04 PM
Subject: Re: [galaxy-dev] Public production instance page is not rendering
properly
To: Daniel Blankenberg d...@bx.psu.edu
Hi Dan,
Thanks for your support, Hmm, I can see that
Hi Dan,
hg config for our repository is:
cat .hg/hgrc
[paths]
default = http://www.bx.psu.edu/hg/galaxy
[ui]
username = Galaxy RaetschLab gal...@raetschlab.org
verbose = True
merge = vimdiff
[merge-tools]
vimdiff.executable = vim
vimdiff.args = -d $base $local $output $other +close +close
23 matches
Mail list logo
