Hi,
I'm looking for the correct syntax to achieve the following:
data type=data format=txt name=loh label=${tool.name} result on
${on_string} (loh)
filterouttype == 0 || outttype == 2 /filter
/data
data type=data format=txt name=cnv label=${tool.name} result on
${on_string} (loh)
On Fri, Jan 31, 2014 at 10:52 AM, Geert Vandeweyer
geert.vandewey...@uantwerpen.be wrote:
Hi,
I'm looking for the correct syntax to achieve the following:
data type=data format=txt name=loh label=${tool.name} result on
${on_string} (loh)
filterouttype == 0 || outttype == 2 /filter
Il 2014-01-31 11:52 Geert Vandeweyer ha scritto:
Hi,
I'm looking for the correct syntax to achieve the following:
data type=data format=txt name=loh label=${tool.name} result
on ${on_string} (loh)
filterouttype == 0 || outttype == 2 /filter
/data
data type=data format=txt name=cnv
Hi,
Thanks for the quick suggestions.
The typo didn't exists in the original code, so that didn't solve it
unfortunately. I fixed it for now by using the negative filter (!=),
suggested by Peter.
Best,
Geert
On 01/31/2014 12:09 PM, Nicola Soranzo wrote:
Il 2014-01-31 11:52 Geert
Hi there,
I have a local copy of galaxy and I am trying to install bowtie2 2.1.0 onto
the system via the toolshed. However it just doesn't work. I always get a
Server Error message. I have checked if the dependencies are installed and
they are all installed in the toolshed depenencies folders.
Hi,
something like that is also possible:
((
params['settingsType'] == custom and
params['unmapped_read_file'] is True
))
So I assume:
outtype == 0 or outtype == 2
will also work.
Cheers,
Bjoern
2014-01-31 Geert Vandeweyer
Hi Alex,
there is a difference in
http://toolshed.g2.bx.psu.edu/view/devteam/package_bowtie2_2_1_0 and
http://toolshed.g2.bx.psu.edu/view/devteam/bowtie_wrappers
The package_* is installing the binary for you and can be used by other
programs as well. bowtie_wrappers contains the actual wrappers
Thanks for your quick answers.
I actually have installed the dependencies first and then I have tried to
add bowtie2 http://toolshed.g2.bx.psu.edu/view/devteam/bowtie2.
But this is where the problem lies: I get following error message:
Server Error An error occurred. See the error logs for more
Alex,
To help determine the cause of this, could you paste the output of the
following commands run from the root of your Galaxy installation?
hg heads
hg id
--Dave B.
On 01/31/2014 09:05 AM, Alexander Kurze wrote:
Thanks for your quick answers.
I actually have installed the
Here we go
changeset: 8796:961ae35ba612
branch: stable
tag: tip
parent: 8794:1c7174911392
user:Nate Coraor n...@bx.psu.edu
date:Fri Feb 08 11:23:04 2013 -0500
summary: Added tag release_2013.02.08 for changeset 1c7174911392
changeset: 8795:9fd7fe0c5712
Alex,
It is likely that the error you're encountering may have been resolved
in the current stable branch. A description of the steps required to
update your installation can be found on the following page:
https://wiki.galaxyproject.org/Admin/GetGalaxy#Keep_your_code_up_to_date
Be advised
Hi,
I want to use the bias correction parameter in cufflinks but cannot figure out
how to get the multifasta file need for it. Can someone help.
Thanks
Shivani
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Hello all,
The 25th Edition of Galaxy Update is
outhttps://wiki.galaxyproject.org/GalaxyUpdates/2014_02.
Highlights from the February 2014 Galaxy
Updatehttps://wiki.galaxyproject.org/GalaxyUpdates/2014_02
include:
-
42 new
Hi Eric,
I figured this was as good of a time as any...
I moved the AD/LDAP/External authentication out of the Apache Proxy page
(who would think to look there?) and into its own page. I added my
organisation's information on mod_auth_kerb while I was at it.
That seemed like a reasonable
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