[galaxy-dev] trouble with share string

2013-07-10 Thread Deniz Erezyilmaz
After 1 year of using the same share string at the launch page * https://biocloudcentral.herokuapp.com/launch, *the program no longer loads my application; I. The instance loads, but my galaxyData folder is empty. I am not sure if the problem has occurred because Galaxy has moved something or

Re: [galaxy-dev] CloudMan Error

2013-07-23 Thread Deniz Erezyilmaz
Hi- while I was able to solve the share string problem, the share string has stopped working again. In addition, I am unable to increase disk size either through the CloudMan console or a dialog box that appears before the cloudman console. Below are the cluster status logs. The Disk status

Re: [galaxy-dev] CloudMan Error

2013-07-24 Thread Deniz Erezyilmaz
Hi- there is a new problem: started 07/24/2013 21:16:27 ./test_dependencies.sh All required executables found in PATH All required R packages are installed Required module not found: /mnt/galaxyData/custom/bin/python_libs/lib/python/pysam-0.6-py2.7-linux-x86_64.egg/csamtools.so: undefined

Re: [galaxy-dev] CloudMan Error

2013-07-25 Thread Deniz Erezyilmaz
Hi- I'm wondering if the share string problem will be fixed this week. The workaround doesn't seem to work and I have needed to analyze my data for almost a month. When I try to start the run: ubuntu@ip-10-218-95-180:/mnt/galaxyData/custom/MY_MSG_RUN$ perl msg/msgCluster.pl I get: started

Re: [galaxy-dev] CloudMan Error

2013-07-26 Thread Deniz Erezyilmaz
PM, Dannon Baker dannon.ba...@gmail.comwrote: On Thu, Jul 25, 2013 at 4:47 PM, Deniz Erezyilmaz deniz...@gmail.comwrote: The workaround doesn't seem to work Can you tell me what happens when you launch with the workaround mentioned previously ( https://main.g2.bx.psu.edu/cloudlaunch?ami=ami

Re: [galaxy-dev] CloudMan Error

2013-07-30 Thread Deniz Erezyilmaz
take a look, and I'd expect it should all work if initialized correctly. On Tue, Jul 30, 2013 at 10:10 AM, Deniz Erezyilmaz deniz...@gmail.comwrote: HI - did you find anything with the share string? Thanks, Deniz On Fri, Jul 26, 2013 at 3:32 PM, Dannon Baker dannon.ba...@gmail.comwrote

Re: [galaxy-dev] CloudMan Error

2013-07-30 Thread Deniz Erezyilmaz
if you want, feel free to drop the list) so that I might take a look? There should be no change at all in your instances from before the new release when using the workaround. On Fri, Jul 26, 2013 at 8:17 AM, Deniz Erezyilmaz deniz...@gmail.comwrote: Dannon- the problems that I saw were