Re: [galaxy-dev] trackster is not working on the vrelease_2014.02.10--2--29ce93a13ac7

2014-03-31 Thread Shu-Yi Su
. Best, J. -- Jeremy Goecks Assistant Professor of Computational Biology George Washington University On Mar 26, 2014, at 11:04 AM, Shu-Yi Su shu-yi...@embl.de wrote: Hi Jeremy, I cleaned the catche on both safari and firefox, but it doesn't work. It still shows the same error

Re: [galaxy-dev] trackster is not working on the vrelease_2014.02.10--2--29ce93a13ac7

2014-03-31 Thread Shu-Yi Su
, Shu-Yi Su s...@embl.de wrote: Hi Jeremy, Which version you download, the most latest one or vrelease_2014.02.10--2--29ce93a13ac7? Thank you very much. Best, Shu-Yi On Mar 28, 2014, at 10:47 PM, Jeremy Goecks wrote: I just downloaded a fresh copy of galaxy-dist and everything

Re: [galaxy-dev] trackster is not working on the vrelease_2014.02.10--2--29ce93a13ac7

2014-03-29 Thread Shu-Yi Su
On Mar 27, 2014, at 4:28 AM, Shu-Yi Su shu-yi...@embl.de wrote: Hi Jeremy, I reverted the files that I have changed, and also cleaned the cache once again. The error messages are the same: Failed to load resource: the server responded with a status of 404 (Not Found) require.js:1

Re: [galaxy-dev] trackster is not working on the vrelease_2014.02.10--2--29ce93a13ac7

2014-03-27 Thread Shu-Yi Su
Girardot charles.girar...@embl.de wrote: Hi Jeremy, After checking, the two js scripts are absent from the release: backbone-relational.js ( static/scripts/packed/libs/backbone/ ) galaxy.utils.js ( static/scripts/packed/utils/ ) bw C On 25 Mar 2014, at 16:16, Shu-Yi Su wrote: Hi

Re: [galaxy-dev] trackster is not working on the vrelease_2014.02.10--2--29ce93a13ac7

2014-03-25 Thread Shu-Yi Su
that you see? Thanks, J. -- Jeremy Goecks Assistant Professor of Computational Biology George Washington University On Mar 24, 2014, at 11:38 AM, Shu-Yi Su shu-yi...@embl.de wrote: Hi all, We have recently updated our local Galaxy installation to vrelease_2014.02.10--2

[galaxy-dev] install ProtK problems

2014-01-13 Thread Shu-Yi Su
Hi, I am currently trying to use ProtK on our Galaxy installation. I have finally installed successfully ProtK on our sever by: rvm install 1.9.3 --with-gcc=clang rvm use 1.9.3 gem install protk So, I can see all the *.rb file in the bin folder (/home/base/.rvm/gems/gems/protk-1.2.5/bin/). We

Re: [galaxy-dev] trackster error for viewing rat data (rn5)

2013-11-22 Thread Shu-Yi Su
, Shu-Yi Su shu-yi...@embl.de wrote: Hi, I am trying to view rat data (rn5) using trackster with data format bam or bigwig on our galaxy installation, but it isn't working. It works with other organisms, such as dm3 or hg19. There is error message in the log: 10.11.70.120 - - [20/Nov

[galaxy-dev] a question about profile annotations tool

2013-06-10 Thread Shu-Yi Su
Hi, I have a question about the tool Profile Annotations in the Operate on Genomic Intervals. I am trying to install this tool on the galaxy, but when I run the program, it shows this error message: AssertionError: Configuration error: Table directory is missing