Anton,
If a user is running a multi-core machine, a simple method to speed up FASTQ
-Groomer is to first split the original FASTQ file (e.g. into 10 smaller files
if you've got a 12-core machine), run FASTQ-Groomer on each file concurrently,
then join the 10 files back together. This allows fo
That worked, Nate!
Thank you very much. I really appreciate your efforts.
Jeff
From: Nate Coraor [n...@bx.psu.edu]
Sent: Wednesday, September 07, 2011 10:33 AM
To: Whyte, Jeffrey
Subject: Re: [galaxy-dev] Galaxy egg fetching error? Mac OS X 10.7 (Lion
for Mac OS X 10.6 Snow Leopard instead of 10.7 Lion. (?)
Thanks,
Jeff
On Sep 6, 2011, at 10:18 AM, Nate Coraor wrote:
> Whyte, Jeffrey wrote:
>> Thanks for the information, Nate.
>>
>> I installed Python as you described, and the error I get now is pasted
>> below
file or
directory
[~] myuserid 01:34 PM >
Jeff
From: Nate Coraor [n...@bx.psu.edu]
Sent: Tuesday, September 06, 2011 10:18 AM
To: Whyte, Jeffrey
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Galaxy egg fetching error? Mac OS X 10.7 (Lion)
__
From: Nate Coraor [n...@bx.psu.edu]
Sent: Friday, September 02, 2011 1:16 PM
To: Whyte, Jeffrey
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Galaxy egg fetching error? Mac OS X 10.7 (Lion)
Whyte, Jeffrey wrote:
> Hi,
>
> I've been having trouble running a local in
Hi,
I've been having trouble running a local instance of Galaxy on a Mac Pro after
upgrading to OS X 10.7 (Lion). My Python version is 2.7.1 and Mercurial is
1.9.1 for MacOS X 10.7. I don't have any MacPorts installed.
The error I see after running the startup script is pasted at the end of t
de Mac's sed, the GNU sed will
> probably be installed as "gsed"), and modify the shell script (from "sed" to
> "gsed").
>
>
> On Apr 27, 2011, at 19:15, "Pieter Neerincx"
> wrote:
>
>> Hi Jeff,
>>
>> On Apr
pported terminal? If not, you should probably install libpng first and
> re-compile gnuplot. If you install gnuplot via MacPorts though it will
> probably already take care of this dependency and install it for you...
>
> Cheers,
>
> Pi
>
>
> On Apr 24, 2011, at 3:57 AM, W
t a
> gnuplot terminal and type 'set terminal' for a list, do you see png as a
> supported terminal? If not, you should probably install libpng first and
> re-compile gnuplot. If you install gnuplot via MacPorts though it will
> probably already take care of this dependenc
ome of these tools can be installed easily on Mac OS using MacPorts
> port search gnuplot
> Of course, you have to install MacPorts first.
> Florent
>
> On 23/04/11 01:25, Whyte, Jeffrey wrote:
>> Hi Everyone,
>>
>> I'm having trouble getting some of the t
se the
latter where I have one bashrc script that sets the environment for all users
and by calling this one from galaxy/run.sh I make sure the environment for
Galaxy is exactly the same as for my (command line) users.
Cheers,
Pi
On Apr 22, 2011, at 5:25 PM, Whyte, Jeffrey wrote:
Hi Everyon
Hi Everyone,
I'm having trouble getting some of the tools to work on my local installation
of Galaxy on a Mac (OS X version 10.6.7). The instructions on the GetGalaxy
wiki are clear, and I was able to download and install from the anonymous
Mercurial repository. Galaxy starts up and runs jus
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