Hi,
I have installed the local galaxy. I deleted a few histories in order to get
some disk space. However, the disk space did not change after the deletion of
the histories.
Do you why ? How can I get some disk space by deleting histories ?
Thanks,
This
Hi,
I noticed that there is a parameter: Maximum insert size for valid paired-end
alignments (-X) for bowtie on Galaxy. The default value on Galaxy is -X 1000. I
was wondering if this is the default value we should use ? Or we need to change
it to another value ?
Thanks a lot.
Jianpeng
Hi,
I have ran Cuffdiff and got output files: transcript differential expression
testing, gene differential expression testing. Could you please tell me how to
get the significant differential expression gene and transcript ?
Thanks,
This e-mail message
Hi,
I have installed the local galaxy. And I have tried to use the data library to
upload some CEL datasets. However, it occurred an error when I use data library
to add datasets.
It showed:
Miscellaneous information: The uploaded binary file contains inappropriate
content
error
Do you know
Hi,
I have installed the local galaxy. I am trying to run some programs.
I have a question now:
If I run a program and the output file will be in the history. If I want to do
something with the output file, it looks like I have to download it at first.
Is there a way to do something with the
Hi,
I have installed the local galaxy. In galaxy, I noticed that the quality score
of fastq datasets have to be converted to sanger format before mapping with
bowtie etc.
But I did not find that the mapping tools (e.g. bowtie) require the quality
score of fastq datasets must be sanger format.
Hi ,
I have installed our local galaxy and I am trying to run FASTQ Trimmer by
column, but I got the error message below:
Traceback (most recent call last): File
/data/home/galaxy/galaxy-dist/tools/fastq/fastq_trimmer.py, line 41, in if
__name__ == __main__: main() File
Hi,
I have installed our local galaxy. However, I can not find the Visualization
menu on the top of the window.
Do you know why ? How to make it show up ?
Thanks,
Jianpeng
This e-mail message (including any attachments) is for the sole use of
the
Hi,
I have installed our local galaxy. I tried to do some analysis on our local
galaxy. However, it seems that I can only run 5 jobs at the same time. When I
submitted the 6th jobs, it was in queue until other jobs finished. \
Can you please tell me how to increase the maximum concurrent jobs
Hi,
I have installed the local galaxy and tried to run draw quality score boxplot.
It showed the error message:
Could not find/open font when opening font arial, using internal non-scalable
font
Could you please tell me how to fix it ?
Thanks,
Jianpeng
10 matches
Mail list logo