data specifications:
> http://wiki.galaxyproject.org/Support#Troubleshooting_tool_errors
> (start here, more help in following sections, same wiki)
>
> Best,
>
> Jen
> Galaxy team
>
>
> On 12/19/12 8:19 AM, shamsher jagat wrote:
>
> I have a bacterial genome from
I have a bacterial genome from ncbi and woulld like to extract seq from the
corresponding fasta file of bacterial genome. Since i have list of
coordinates so would not be possible to extract one by one. Is there any
interface within galxy that i can use.
Thanks
use CISTROME
On Tue, Dec 18, 2012 at 8:09 PM, Alfonso Garrido-Lecca <
alfonso.garrido-le...@colorado.edu> wrote:
> Hello,
> I am new in using galaxy on the cloud. I am trying to analyze my ChIP-seq
> data.
> However, when I try to run the MACS peak calling algorithm on my BAM files
> I get
> an
FTP or URL
On Sat, Dec 1, 2012 at 5:37 AM, 泽 蔡 wrote:
> Hi all,
>
> I'm a new guy of galaxy and bioinformatics.
> I read the document of galaxy, but it's so hard to find what I need.
> I already set up a locale instance of galaxy, it works fine. The problem
> is I need to analysis large data, bu
Can we also fetch virus file from some sources like this?
Thanks
Kanwar
On Mon, Nov 26, 2012 at 4:25 AM, Joachim Jacob wrote:
> You can use 'Get data' --> 'UCSC Main' to fetch an GTF (gene transfer
> format) format of your species of interest, Human in this case. I tend to
> use the Ensembl ge
Is there a work flow/ tutorial how to call SNP and get significant SNP
followed by their annotation.
Thanks
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I was never able to donwload data from history (Penn state server). I would
be intersted to see the feedback on this quetion.
Thanks.
On Wed, Jun 6, 2012 at 6:53 AM, Jean-Francois Payotte <
jean-francois.payo...@dnalandmarks.ca> wrote:
> Hi folks,
>
> Some of our local Galaxy instance users seem
I am not sure if this is the right place to post this message, I want to
download TSS fro a list of around 1000 human genes. Is this something I can
do in Galaxy?
Thanks.
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I have also been getting such messages and even saying there are too
many re-bounces so your account is being disabled and I can not reactivate
using the link sent in email
On Sun, May 22, 2011 at 11:28 PM, shashi shekhar wrote:
>
>
> -- Forwarded message --
> From:
> Date: Mon,
file is - expr
file filter save as txt file and upload back in Galaxy.
Any suggestion?
Jagat
On Tue, May 3, 2011 at 3:08 AM, shamsher jagat wrote:
> Jeremy,
>
> I have been trying to follow the steps in filtering Cufflink out put files
> you have described in one of the previ
Jeremy,
I have been trying to follow the steps in filtering Cufflink out put files
you have described in one of the previous messages (
http://gmod.827538.n3.nabble.com/Re-downstream-analysis-of-cuffdiff-out-put-td2836457.html
):
I have shared histroy with you, but in summary:
File 35: when F
Is it possible to extract genomic coordinates If I have gene accession ID
Chr stat and end position. Any pointer will be helpful.
Thanks.
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