Re: [galaxy-dev] Error / import rpy module

2013-06-05 Thread Hans-Rudolf Hotz
Hi Sarah you need to install the rpy module: http://rpy.sourceforge.net/rpy.html As a warning: we have been struggling to get rpy to work with newer versions of R. In or experience in only works with R version 2.9 and older. Thanks to a recent effort of our sysadmin, we can now use it with

Re: [galaxy-dev] Error / import rpy module

2013-06-05 Thread Peter Cock
On Wed, Jun 5, 2013 at 9:42 AM, Hans-Rudolf Hotz h...@fmi.ch wrote: Hi Sarah you need to install the rpy module: http://rpy.sourceforge.net/rpy.html As a warning: we have been struggling to get rpy to work with newer versions of R. In or experience in only works with R version 2.9 and

Re: [galaxy-dev] Error / import rpy module

2013-06-05 Thread Sarah Maman
Thanks a lot for these explantions, I have downloded refactored tools (rpy2 is more suited to our R version). Unfortunatly, galaxy still do not import rpy2 .. Traceback (most recent call last): File /usr/local/bioinfo/src/galaxy/galaxy-dist/tools/plotting/histogram.py, line 6, in module

Re: [galaxy-dev] Error / import rpy module

2013-06-05 Thread John Chilton
Three quick comments on this thread: - A real short-coming of my colleague JJ is that he doesn't possess a tenth the ego that I do, so he doesn't care, but I think it is important he gets credit. He did 85% of the work, and the harder 85% at that, so they should be called the JJ changes. - It is

Re: [galaxy-dev] Error / import rpy module

2013-06-05 Thread Peter Cock
On Wed, Jun 5, 2013 at 2:18 PM, John Chilton chil...@msi.umn.edu wrote: Three quick comments on this thread: - A real short-coming of my colleague JJ is that he doesn't possess a tenth the ego that I do, so he doesn't care, but I think it is important he gets credit. He did 85% of the work,