ou have come across this
> error before.
>
> Many thanks for your time.
>
> Regards,
> Sonali
>
>
>
>
>
>
> -Original Message-
> From: Nate Coraor [mailto:n...@bx.psu.edu]
> Sent: Tuesday, February 15, 2011 10:30 PM
> To: Sonali A
with setuptools version in Galaxy installation
on Cluster
Sonali Amonkar wrote:
> On further digging, we found that the script is failing in the following part
> of $GALAXY_HOME/lib/galaxy/jobs/runners/pbs.py:
>
> # submit
> galaxy_job_id = job_wrapper.job_id
>
Sonali Amonkar wrote:
> On further digging, we found that the script is failing in the following part
> of $GALAXY_HOME/lib/galaxy/jobs/runners/pbs.py:
>
> # submit
> galaxy_job_id = job_wrapper.job_id
> log.debug("(%s) submitting file %s" % ( galaxy_job_id, job_file ) )
>
y 12, 2011 2:10 AM
To: Sonali Amonkar
Cc: Galaxy Dev
Subject: Re: [galaxy-dev] Error with setuptools version in Galaxy installation
on Cluster
Nate Coraor wrote:
> Sonali Amonkar wrote:
> >
> > I am currently facing another issue. When I run my Workflow, I am seeing
> > the fo
ecific PBS Torque version on which Galaxy has been tested?
Thank you for your time Nate,
Warm Regards,
Sonali Amonkar
-Original Message-
From: Nate Coraor [mailto:n...@bx.psu.edu]
Sent: Saturday, February 12, 2011 2:10 AM
To: Sonali Amonkar
Cc: Galaxy Dev
Subject: Re: [galaxy-dev] Error with
Nate Coraor wrote:
> Sonali Amonkar wrote:
> >
> > I am currently facing another issue. When I run my Workflow, I am seeing
> > the following error on the server log. This error is not consistent, and
> > occurs in an erratic manner.
> >
> > galaxy.jobs INFO 2011-02-03 05:17:03,522 job 151 di
Sonali Amonkar wrote:
>
> I am currently facing another issue. When I run my Workflow, I am seeing the
> following error on the server log. This error is not consistent, and occurs
> in an erratic manner.
>
> galaxy.jobs INFO 2011-02-03 05:17:03,522 job 151 dispatched
> galaxy.jobs.runners.pb
To be more precise I made the following change in
scripts/scramble/build/py2.4-linux-x86_64-ucs2/pbs_python/scramble.py
# version string in 2.9.4 setup.py is wrong
print "scramble(): Patching setup.py"
if not os.path.exists( 'setup.py.orig' ):
shutil.copyfile( 'setup.py', 'setup.py.orig' )
Hi Nate,
The last option you gave worked like a charm! Thank you for your assistance!
Warm regards,
Sonali Amonkar
-Original Message-
From: Nate Coraor [mailto:n...@bx.psu.edu]
Sent: Thursday, January 27, 2011 7:21 PM
To: Sonali Amonkar
Cc: Galaxy Dev
Subject: Re: Error with setuptools
Hi Sonali,
Since this is a local installation question, I have moved the discussion
to galaxy-dev. Further responses are inline below.
Sonali Amonkar wrote:
> Hi,
>
> First of all I would like to appreciate the clean and neat documentation
> written for the Galaxy setup for Cluster.
>
> I am
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