Hello Joe,
I've enhanced the feature for defining sample form rows in change set
5716:6e1576c83456 (currently available only in our development repo, but will
be available in the distribution shortly) to include the ability to include
field values (in addition to field names) when defining samp
Joe,
Sorry for the confusing back-and-forth on this. Galaxy is not currently able
to fill in the form field values for sample forms using the contents of a csv
file. However, this additional feature shouldn't be too difficult to add, so
I'll look into it as soon as possible.
Greg
On Jun 10,
Hey Greg,
Sorry for not being clear. I'm trying to create a sample information form
where users can import csv files which would contain DIFFERENT values for
each field. So, while one sample may have value 'agctac' for the last
field, another sample will have a different value, say '123. So, t
Joe,
Try editing your Sample Form Definition, changing the "Field name" value from
the default of "1_field_name" to be your desired "agctac". Then, your csv file
with the line
Sample1,Library1,Lib1Folder1,History,Workflow,agctac
should work.
Greg
On Jun 9, 2011, at 6:03 PM, Joe Cruz wrote:
Hey Greg,
Unfortunately after pulling your changeset I got a new error related to
'1_field_name'. Here is the error traceback:
URL:
http://localhost:8080/requests_common/add_samples?cntrller=requests&id=f2db41e1fa331b3e
File
'/home/jcruz/galaxy-central/eggs/WebError-0.8a-py2.6.egg/weberror/eva
Joe,
Thanks very much for the example csv file. I've fixed this issue in change set
5668:81a5c317d909, which should be available in the distribution within the
next few weeks. If you don't want to wait, you can update from our development
repo at https://bitbucket.org/galaxy/galaxy-central/wi
For my sample forms I have fields for Sample type, concentration, run type,
and read length.
I greatly appreciate your help Greg. If you have any other questions let me
know.
Thanks,
Joe
On Tue, Jun 7, 2011 at 2:56 PM, Greg Von Kuster wrote:
> Hello Joe,
>
> Can you send me your csv file?
>
Hello Joe,
Can you send me your csv file?
Thanks!
On Jun 7, 2011, at 10:45 AM, Joe Cruz wrote:
> Hello Everyone,
>
> I wanted to ask if anyone has experience successfully importing sample
> information through a csv file.
>
> I know there is an issue already created for csv file import, whic
Hello Everyone,
I wanted to ask if anyone has experience successfully importing sample
information through a csv file.
I know there is an issue already created for csv file import, which I left a
comment earlier:
https://bitbucket.org/galaxy/galaxy-central/issue/398/csv-import-of-sample-informat
