Re: [galaxy-dev] Configuring Data Library Usage for Non-Admins

2012-06-24 Thread Ciara Ledero
Hi again,

I've already done what you guys have suggested, but when I tried uploading
a file, I got this error:

The directory some directory here contains no valid files

I checked if I placed the right path and created the correct folder, and
everything seems fine. The file is a FASTQ file (ending in .fq). What could
be causing Galaxy to see the file as not valid for upload?

Thanks for the help!
___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Re: [galaxy-dev] Configuring Data Library Usage for Non-Admins

2012-06-20 Thread Ciara Ledero
Thank you all for the answers!

CL
___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Re: [galaxy-dev] Configuring Data Library Usage for Non-Admins

2012-06-18 Thread Ciara Ledero
Okay, so the only way for a user to upload a file with a size greater than
2GB is to use FTP? Or can a non-admin user be granted permission to upload
files using the filesystem path option, given that he/she can only access
his/her own directory?

Thanks,
CL
___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Re: [galaxy-dev] Configuring Data Library Usage for Non-Admins

2012-06-18 Thread Nate Coraor
On Jun 18, 2012, at 5:04 AM, Ciara Ledero wrote:

 Okay, so the only way for a user to upload a file with a size greater than 
 2GB is to use FTP? Or can a non-admin user be granted permission to upload 
 files using the filesystem path option, given that he/she can only access 
 his/her own directory?

Hi Ciara,

They can use the upload from a directory method if you configure Galaxy as 
explained by greg (user_library_import_dir).  Users will also need to have 
permissions to upload to libraries that the admin chooses.  From the admin 
interface, select a library, click Library Actions - Edit permissions, and 
then assign the appropriate users' private role(s) to the add library item 
permission.

--nate

 
 Thanks,
 CL
 ___
 Please keep all replies on the list by using reply all
 in your mail client.  To manage your subscriptions to this
 and other Galaxy lists, please use the interface at:
 
  http://lists.bx.psu.edu/


___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/


[galaxy-dev] Configuring Data Library Usage for Non-Admins

2012-06-14 Thread Ciara Ledero
Hi all,

I was able to configure Galaxy so that admins can use its Data Library
functionality. My colleague then asked if I could do the same for non-admin
users. I looked at the universe_wsgi.ini file and added a folder for the
users. How will I know that all is ready? I logged-in with a non-admin
account and I found nothing altered in the interface. Is there something
else that I need to do?

Thanks in advance for the help!

Cheers,

CL
___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/

Re: [galaxy-dev] Configuring Data Library Usage for Non-Admins

2012-06-14 Thread Ciara Ledero
Can non-admin users also utilize the option using filepaths?
___
Please keep all replies on the list by using reply all
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:

  http://lists.bx.psu.edu/