Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-25 Thread Nate Coraor
ou have come across this > error before. > > Many thanks for your time. > > Regards, > Sonali > > > > > > > -Original Message- > From: Nate Coraor [mailto:n...@bx.psu.edu] > Sent: Tuesday, February 15, 2011 10:30 PM > To: Sonali A

Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-25 Thread Sonali Amonkar
with setuptools version in Galaxy installation on Cluster Sonali Amonkar wrote: > On further digging, we found that the script is failing in the following part > of $GALAXY_HOME/lib/galaxy/jobs/runners/pbs.py: > > # submit > galaxy_job_id = job_wrapper.job_id >

Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-15 Thread Nate Coraor
Sonali Amonkar wrote: > On further digging, we found that the script is failing in the following part > of $GALAXY_HOME/lib/galaxy/jobs/runners/pbs.py: > > # submit > galaxy_job_id = job_wrapper.job_id > log.debug("(%s) submitting file %s" % ( galaxy_job_id, job_file ) ) >

Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-15 Thread Sonali Amonkar
y 12, 2011 2:10 AM To: Sonali Amonkar Cc: Galaxy Dev Subject: Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster Nate Coraor wrote: > Sonali Amonkar wrote: > > > > I am currently facing another issue. When I run my Workflow, I am seeing > > the fo

Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-15 Thread Sonali Amonkar
setuptools version in Galaxy installation on Cluster Nate Coraor wrote: > Sonali Amonkar wrote: > > > > I am currently facing another issue. When I run my Workflow, I am seeing > > the following error on the server log. This error is not consistent, and > > occurs in a

Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-11 Thread Nate Coraor
Nate Coraor wrote: > Sonali Amonkar wrote: > > > > I am currently facing another issue. When I run my Workflow, I am seeing > > the following error on the server log. This error is not consistent, and > > occurs in an erratic manner. > > > > galaxy.jobs INFO 2011-02-03 05:17:03,522 job 151 di

Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-11 Thread Nate Coraor
Sonali Amonkar wrote: > > I am currently facing another issue. When I run my Workflow, I am seeing the > following error on the server log. This error is not consistent, and occurs > in an erratic manner. > > galaxy.jobs INFO 2011-02-03 05:17:03,522 job 151 dispatched > galaxy.jobs.runners.pb

Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-03 Thread Sonali Amonkar
To be more precise I made the following change in scripts/scramble/build/py2.4-linux-x86_64-ucs2/pbs_python/scramble.py # version string in 2.9.4 setup.py is wrong print "scramble(): Patching setup.py" if not os.path.exists( 'setup.py.orig' ): shutil.copyfile( 'setup.py', 'setup.py.orig' )

Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-02-02 Thread Sonali Amonkar
Hi Nate, The last option you gave worked like a charm! Thank you for your assistance! Warm regards, Sonali Amonkar -Original Message- From: Nate Coraor [mailto:n...@bx.psu.edu] Sent: Thursday, January 27, 2011 7:21 PM To: Sonali Amonkar Cc: Galaxy Dev Subject: Re: Error with setuptools

Re: [galaxy-dev] Error with setuptools version in Galaxy installation on Cluster

2011-01-27 Thread Nate Coraor
Hi Sonali, Since this is a local installation question, I have moved the discussion to galaxy-dev. Further responses are inline below. Sonali Amonkar wrote: > Hi, > > First of all I would like to appreciate the clean and neat documentation > written for the Galaxy setup for Cluster. > > I am