Re: [galaxy-dev] Is dynamic associated information per dataset possible?

2011-05-30 Thread Nate Coraor
-dev Subject: Re: [galaxy-dev] Is dynamic associated information per dataset possible? In addition to Data Library templates, which are useful after the sequencer data has arrived in a Galaxy Data Library, Galaxy's sample tracking system includes sample run templates which are very similar

Re: [galaxy-dev] Is dynamic associated information per dataset possible?

2011-05-30 Thread Ross
Duddy, John wrote: The sample tracking system looks interesting. It looks like this is designed to have the sequencers modeled in Galaxy, have Galaxy pull the data from the sequencers, and might assume 1-1 pairing between sequencing run and samples. I'd like to be able to support pushing

Re: [galaxy-dev] Is dynamic associated information per dataset possible?

2011-05-26 Thread Nate Coraor
Duddy, John wrote: We'd like to be able to associate fixed things (project, Sample, sequencer used) with user's FASTQ files, and we'd also like to allow users to associate dynamic, site-specific stuff with the sequencing run. Currently, users track their runs using a CSV sample sheet, and

Re: [galaxy-dev] Is dynamic associated information per dataset possible?

2011-05-26 Thread Roman Valls
Nate, is it just me or all the .png links on that wikipage are broken/missing ? :-S On 2011-05-26 10:38, Nate Coraor wrote: Duddy, John wrote: We'd like to be able to associate fixed things (project, Sample, sequencer used) with user's FASTQ files, and we'd also like to allow users to

Re: [galaxy-dev] Is dynamic associated information per dataset possible?

2011-05-26 Thread Peter Cock
On Thu, May 26, 2011 at 10:34 AM, Roman Valls brainst...@nopcode.org wrote: Nate, is it just me or all the .png links on that wikipage are broken/missing ? :-S I've noticed this on other pages, I think some stuff got moved a while back. They just need the folder name prefixed... Peter

Re: [galaxy-dev] Is dynamic associated information per dataset possible?

2011-05-26 Thread Nate Coraor
Roman Valls wrote: Nate, is it just me or all the .png links on that wikipage are broken/missing ? :-S Hi Roman, We've had occasional problems with the images in the wiki, and I think sometimes they'll show up, sometimes they won't. We're in the process of migrating the wiki to our own Moin

Re: [galaxy-dev] Is dynamic associated information per dataset possible?

2011-05-26 Thread Duddy, John
:38 AM To: Duddy, John Cc: galaxy-dev@lists.bx.psu.edu Subject: Re: [galaxy-dev] Is dynamic associated information per dataset possible? Duddy, John wrote: We'd like to be able to associate fixed things (project, Sample, sequencer used) with user's FASTQ files, and we'd also like to allow users

Re: [galaxy-dev] Is dynamic associated information per dataset possible?

2011-05-26 Thread Duddy, John
Message- From: Greg Von Kuster [mailto:g...@bx.psu.edu] Sent: Thursday, May 26, 2011 2:18 AM To: Duddy, John Cc: galaxy-dev Subject: Re: [galaxy-dev] Is dynamic associated information per dataset possible? In addition to Data Library templates, which are useful after the sequencer data has

[galaxy-dev] Is dynamic associated information per dataset possible?

2011-05-25 Thread Duddy, John
We'd like to be able to associate fixed things (project, Sample, sequencer used) with user's FASTQ files, and we'd also like to allow users to associate dynamic, site-specific stuff with the sequencing run. Currently, users track their runs using a CSV sample sheet, and often they add columns