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Date: Sat, 14 Apr 2012 22:33:22 +0200
From: Klaus Metzeler m...@klaus-metzeler.de
To: Michael Moore michaelglennmo...@gmail.com
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Problem with cleaning up galaxy datasets
Message-ID:
4F89DF12.6010606@klaus-**metzeler.de4f89df12.6010
repost bounced msg, see why below
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Date: Sat, 14 Apr 2012 22:33:22 +0200
From: Klaus Metzeler m...@klaus-metzeler.de
To: Michael Moore michaelglennmo...@gmail.com
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Problem with cleaning up galaxy datasets
Message-ID: 4f89df12.6010
OK, this pointed me to the right direction.
The universe_wsgi.ini file has a key that reads:
database_connection =
sqlite:///./database/universe.sqlite?isolation_level=IMMEDIATE
This entry was commented out in my version of the file (ie, had a # in
front of it). While Galaxy itself uses this
Klaus,
I'm getting this too. I tried yesterday fro the first time to clean up my
local Galaxy data. (I was trying to purge all data and histories, ie. reset
the database to as-new). This is in a Galaxy download and install done on
12 March 2012. I'd give you the hg -heads/summary and some other
Yes, you do not have a url like http://some_path or ssh://some_path
defined in your config file. Look at the command-line options for
your routines and figure out how it is finding your config file. It
could be looking in the wrong place or you could have an error in the
config file (missing
