thanks,
Stef
- Original message -
From: Kandalaft, Iyad iyad.kandal...@agr.gc.ca
To: Stef van Lieshout stefvanliesh...@fastmail.fm,
galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev] R bioconductor dependencies when creating
toolshed installation
Date: Mon, 16
Hi Stef,
for R packages we have a special installation routine that will
(hapefully) make your life easier.
I'm running into some difficulties on how to setup the installation
procedure for a galaxy tool which executes an R script and has certain
dependencies (mainly bioconductor packages).
stefvanliesh...@fastmail.fm,
galaxy-dev@lists.bx.psu.edu galaxy-dev@lists.bx.psu.edu
Subject: RE: [galaxy-dev] R bioconductor dependencies when creating
toolshed installation
Date: Mon, 16 Jun 2014 18:19:46 +
I would typically recommend Option 3 as it is the best practice.
However, human
To: Stef van Lieshout stefvanliesh...@fastmail.fm,
galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] R bioconductor dependencies when creating
toolshed installation
Date: Tue, 17 Jun 2014 15:17:36 +0200
Hi Stef,
for R packages we have a special installation routine that will
(hapefully) make your
architectures.
Cheers,
Bjoern
Thanks again!
Stef
- Original message -
From: Björn Grüning bjoern.gruen...@gmail.com
To: Stef van Lieshout stefvanliesh...@fastmail.fm,
galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] R bioconductor dependencies when creating
toolshed installation
Date: Tue
!
Stef
- Original message -
From: Björn Grüning bjoern.gruen...@gmail.com
To: Stef van Lieshout stefvanliesh...@fastmail.fm,
galaxy-dev@lists.bx.psu.edu, Dave Bouvier d...@bx.psu.edu
Subject: Re: [galaxy-dev] R bioconductor dependencies when creating
toolshed installation
Date: Tue, 17 Jun 2014
Hi all,
I'm running into some difficulties on how to setup the installation
procedure for a galaxy tool which executes an R script and has certain
dependencies (mainly bioconductor packages). R can deal with
dependencies, packages can be installed with install.packages (has a
dependencies
@lists.bx.psu.edu
Subject: [galaxy-dev] R bioconductor dependencies when creating toolshed
installation
Hi all,
I'm running into some difficulties on how to setup the installation procedure
for a galaxy tool which executes an R script and has certain dependencies
(mainly bioconductor packages). R can
