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From: Nikos Sidiropoulos nikos.sid...@gmail.com
To: Peter Cock p.j.a.c...@googlemail.com
Cc: galaxy-...@bx.psu.edu galaxy-...@bx.psu.edu
Sent: Wednesday, September 11, 2013 8:19 AM
Subject: Re: [galaxy-dev] Scaling and hardware requirements
Hi Peter
p.j.a.c...@googlemail.com; galaxy-...@bx.psu.edu galaxy-...@bx.psu.edu
Sent: Thursday, September 12, 2013 10:00 AM
Subject: Re: [galaxy-dev] Scaling and hardware requirements
This isn't an easy question to answer. Here's why:
*there is significant variation in mammalian genome size; of course
Hi all,
I have a couple of questions regarding a server setup dedicated on Galaxy.
The idea is to buy a 64 core 256GB RAM server. From my experience I believe
that Galaxy will be able to scale up to 64 cpu's but I would like some more
feedback on this. Also, is 4GB RAM per CPU core enough for
On Wed, Sep 11, 2013 at 1:03 PM, Nikos Sidiropoulos
nikos.sid...@gmail.com wrote:
Hi all,
I have a couple of questions regarding a server setup dedicated on Galaxy.
The idea is to buy a 64 core 256GB RAM server. From my experience I believe
that Galaxy will be able to scale up to 64 cpu's
Hi Peter
It's going to be one big machine, running both Galaxy server and the jobs.
It's going to be a multi-process configuration. If that idea is terribly
bad please let me know so I can give back the feedback.
De novo assembly can also be for the human/mouse genome.
Bests,
Nikos
2013/9/11
On Wed, Sep 11, 2013 at 1:19 PM, Nikos Sidiropoulos
nikos.sid...@gmail.com wrote:
Hi Peter
It's going to be one big machine, running both Galaxy server and the jobs.
It's going to be a multi-process configuration. If that idea is terribly bad
please let me know so I can give back the
I'm not sure how easy it would be to setup your Galaxy to only
allow one de novo assembly at a time - which would seem a
sensible precaution given you may have multiple users (or the
same user) trying to run assemblies in parallel.
I guess I could dedicate a handler to run this specific tool
] Scaling and hardware requirements
Hi Peter
It's going to be one big machine, running both Galaxy server and the jobs.
It's going to be a multi-process configuration. If that idea is terribly bad
please let me know so I can give back the feedback.
De novo assembly can also
