Dear Galaxy Representative,
I'm trying to use Bowtie2 in Galaxy and I need to select reference genome.
It says If your genome of interest is not listed, contact the Galaxy team
and that is why I am contacting you.
My genome of interest is Maize (corn, Zea mays) and information about it
can be
Dear Sir or Madam,
We have installed our local Galaxy server and everything looks fine.
But there are some issues with reference genome index.
The BWA and Mageblast is working. Here is how bwa_index.loc looks like:
hg18fullhg18Human (Homo sapiens): hg18 Full
Hi Xiaofei,
It is best to keep replied on the mailing list.
First, confirm that you are running the most current version of the
Galaxy distribution. This should be true by default if the installation
was just performed.
https://wiki.galaxyproject.org/DevNewsBriefs
Howdy!
I only see the Caenorhabditis elegans: WS220.64 reference genome listed in
the Genome drop down menu in the snpEff tool. If possible, I would like to
use the latest human genome hg19. Can it be added as an option? Thanks in
advance.
Not: I did follow the link to the developer's
, February 17, 2014 10:01 AM
To: galaxy-dev@lists.bx.psu.edu
Subject: [galaxy-dev] Reference Genome in snpEff Tool
Howdy!
I only see the Caenorhabditis elegans: WS220.64 reference genome listed in
the Genome drop down menu in the snpEff tool. If possible, I would like to
use the latest human
for CloudMap pipeline.
From: galaxy-dev-boun...@lists.bx.psu.edu [galaxy-dev-boun...@lists.bx.psu.edu]
on behalf of Clint Christensen [cli...@txbiomedgenetics.org]
Sent: Monday, February 17, 2014 10:01 AM
To: galaxy-dev@lists.bx.psu.edu
Subject: [galaxy-dev
