Thanks Sajoshca, that did help, along with replacing datatypes_conf.xml
with datatypes_conf.xml.sample and tool_conf.xml with
tool_conf.xml.samples (some of the migrated tools were not removed from
this file).
All in all...it's working now.
Best,
Liisa
From: Sajoscha Sauer sa...@embl.de
Hi Liisa,
For us, it was only copying the directory
“galaxy-dist/static/scripts/packed/viz” from a fresh install to the
installation we wanted to update.
I hope that helps!
Cheers,
Sajoscha
On Apr 10, 2014, at 5:57 PM, Liisa Koski liisa.ko...@basf.com wrote:
Hello,
I just updated to
Hello,
I just updated to Feb.10 and also noticed that Trackster is not working. I
too get the blank screen. Could you please tell me how to manually update
the vis packed files? I do not know what these are.
Thanks in advance,
Liisa
___
Hi Jeremy,
I reverted the files that I have changed, and also cleaned the cache once
again. The error messages are the same:
Failed to load resource: the server responded with a status of 404 (Not Found)
require.js:1:1910Error: Script error for: libs/backbone/backbone-relational
Hi Jeremy,
We found that the vis packed files were somehow not updated when we did the
Galaxy updates. So, we manually update these files and now the trackster is
working fine.
Thank you very much for the help!!
Best,
Shu-Yi
On Mar 29, 2014, at 7:51 PM, Jeremy Goecks wrote:
I cloned
Hi Jeremy,
Which version you download, the most latest one or
vrelease_2014.02.10--2--29ce93a13ac7?
Thank you very much.
Best,
Shu-Yi
On Mar 28, 2014, at 10:47 PM, Jeremy Goecks wrote:
I just downloaded a fresh copy of galaxy-dist and everything worked fine with
Trackster. This suggests
I cloned directly from galaxy-dist:
% hg clone https://bitbucket.org/galaxy/galaxy-dist/
which gives you the latest release, and it is 2014.02.10--2–29ce93a13ac7
Best,
J.
--
Jeremy Goecks
Assistant Professor of Computational Biology
George Washington University
On Mar 29, 2014, at 3:02 AM,
I just downloaded a fresh copy of galaxy-dist and everything worked fine with
Trackster. This suggests that your Galaxy installation is somehow corrupted.
You’ll need to rollback any changes to your repository and/or start from a
fresh copy.
Let us know if you need help doing this.
Best,
J.
Hi Jeremy,
I cleaned the catche on both safari and firefox, but it doesn't work. It still
shows the same error messages.
Thank you very much for the help!!
Best,
Shu-Yi
On Mar 26, 2014, at 2:00 PM, Jeremy Goecks wrote:
This sounds like a cache issue. Both of these scripts have been removed
Hi Jeremy,
After checking, the two js scripts are absent from the release:
backbone-relational.js ( static/scripts/packed/libs/backbone/ )
galaxy.utils.js ( static/scripts/packed/utils/ )
bw
C
On 25 Mar 2014, at 16:16, Shu-Yi Su wrote:
Hi Jeremy,
Thank you very much for the reply.
This sounds like a cache issue. Both of these scripts have been removed from
the distribution, so they should be absent from the distribution. Can you try
clearing your cache and see if that fixes the issue?
Thanks,
J.
--
Jeremy Goecks
Assistant Professor of Computational Biology
George
The next step then is to revert all the changes that you pulled from -central
and report back the errors you’re seeing. Manually pulling selected change sets
can be problematic if you don’t get all the dependencies.
Best,
J.
--
Jeremy Goecks
Assistant Professor of Computational Biology
George
Providing some additional information will help diagnose the problem:
*are you running galaxy-dist? If so, have you manually pulled and applied
commits from galaxy-central? If so, which ones?
*which Web browser are you using?
*can you please open the JavaScript console in your browser and
Hi Jeremy,
Thank you very much for the reply.
Yes, we are running on galaxy-dist, and manually pulled to update our
installation. The release version is vrelease_2014.02.10--2--29ce93a13ac7.
I have tried safari and firefox. Both are not working.
Here is the error massage from console:
[Error]
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