Canada
*From:* galaxy-dev-boun...@lists.bx.psu.edu [mailto:
galaxy-dev-boun...@lists.bx.psu.edu] *On Behalf Of *INKozin
*Sent:* Thursday, June 12, 2014 11:35 AM
*To:* galaxy-dev@lists.bx.psu.edu
*Subject:* Re: [galaxy-dev] troubleshooting Galaxy with LSF
The problem seems
]
Sent: June 14, 2014 6:18 PM
To: Kandalaft, Iyad
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] troubleshooting Galaxy with LSF
I'm not sure what you mean. I'm not using python virtual env, anaconda etc
But I do set all variables which are required to run Galaxy such as DRMAA
path
Hi Nate,
The new LSF DRMAA is the old FedStage source code. However the latest
release (v 1.1.1) is claimed to be compatible with LSF 9.1.2 which we are
using. And it does work indeed.
Yes, I've re-built the lib with --enable-debug and confirmed that the
segfault happens on returning from
[igk...@gmail.com] on behalf of INKozin
[i.n.ko...@googlemail.com]
Sent: June 14, 2014 6:18 PM
To: Kandalaft, Iyad
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] troubleshooting Galaxy with LSF
I'm not sure what you mean. I'm not using python virtual env, anaconda etc
But I do set all
The problem seems to be with DRMAA for Python. While it works fine on the
OpenSuse
12.1 box, I'm getting a segfault on RH 6.4.
Surprisingly, the job however gets submitted and run successfully.
___
Please keep all replies on the list by
The problem seems to be with DRMAA for Python. While it works fine on the
OpenSuse 12.1 box, I'm getting a segfault on RH 6.4.
Surprisingly, the job however gets submitted and run successfully.
___
Please keep all replies on the list by using
...@lists.bx.psu.edu
[mailto:galaxy-dev-boun...@lists.bx.psu.edu] On Behalf Of INKozin
Sent: Thursday, June 12, 2014 11:35 AM
To: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] troubleshooting Galaxy with LSF
The problem seems to be with DRMAA for Python. While it works fine on the
OpenSuse
12.1 box, I'm
Hello,
This is largely a repost from the biostar forum following the suggestion
there to post here.
I'm doing my first steps in setting up a Galaxy server with an LSF job
scheduler. Recently LSF started supporting DRMAA again so I decided to give
it a go.
I have two setups. The one that works is
-dev@lists.bx.psu.edu
Subject: [galaxy-dev] troubleshooting Galaxy with LSF
Hello,
This is largely a repost from the biostar forum following the suggestion there
to post here.
I'm doing my first steps in setting up a Galaxy server with an LSF job
scheduler. Recently LSF started supporting DRMAA
