Re: [galaxy-dev] upload files by cluster with pbs-python returns empty files

2013-01-17 Thread Fields, Christopher J
I saw this same problem with our upload1 set to run on the cluster (it had worked properly a few months prior). I found out that the cluster sysadmins had set the nodes for local access only (no web access), direct file uploads and FTP to local disk worked but URL-based uploads did not. The

Re: [galaxy-dev] upload files by cluster with pbs-python returns empty files

2012-08-31 Thread Geert Vandeweyer
Hi Nate, The datafile is really empty on the disk (size 0, checked at the full path etnry from the dataset info). Best regards, Geert Vandeweyer On 08/29/2012 06:05 PM, Nate Coraor wrote: On Jul 16, 2012, at 6:14 AM, Geert Vandeweyer wrote: Hi, We have set up a local instance of

Re: [galaxy-dev] upload files by cluster with pbs-python returns empty files

2012-08-31 Thread Nate Coraor
On Aug 31, 2012, at 8:33 AM, Geert Vandeweyer wrote: Hi Nate, The datafile is really empty on the disk (size 0, checked at the full path etnry from the dataset info). Best regards, Geert Vandeweyer Although it should generate an error rather than an empty file, can you ensure that

Re: [galaxy-dev] upload files by cluster with pbs-python returns empty files

2012-08-29 Thread Nate Coraor
On Jul 16, 2012, at 6:14 AM, Geert Vandeweyer wrote: Hi, We have set up a local instance of galaxy-dist, using pbs-python to communicate with our HPC. Everything is working great, except for the upload functionality. When I assign the upload1 to local:/// , uploading of small files

[galaxy-dev] upload files by cluster with pbs-python returns empty files

2012-07-16 Thread Geert Vandeweyer
Hi, We have set up a local instance of galaxy-dist, using pbs-python to communicate with our HPC. Everything is working great, except for the upload functionality. When I assign the upload1 to local:/// , uploading of small files through the web-site works, and upload of large files by ftp