[galaxy-dev] Docker on Windows 10

Hi, I am on the way to set up a Docker container on win 10. My problem is that I do not often work on win 10. My idea is to set up a galaxy which can be uses once in a while if needed and will be shutdown or not started if not needed: So I am interested in exporting all datasets including the

[galaxy-dev] my.galaxy/toolshed bioblend or install_tool_shed_tools swallows toolshed

Hi, a) short version: instead of: http://gecko.imp.univie.ac.at/galtools/api/repositories/get_ordered_installable_revisions?owner=itme=shrnaseqw the tool makes a request to: http://gecko.imp.univie.ac.at/api/repositories/get_ordered_installable_revisions?owner=itme=shrnaseqw (i.e. galtools is

Re: [galaxy-dev] Parameters out

Hi Katherine, That one's beyond me, sorry. Devon -- Devon Ryan, Ph.D. Email: dpr...@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany On Tue, Aug 30, 2016 at 2:46 PM, Katherine Beaulieu

Re: [galaxy-dev] Parameters out

Hi Devon, Thanks for the information! Do you know where in the code base Galaxy accesses these values for tool execution though? Cheers, Katherine On Tue, Aug 30, 2016 at 8:44 AM, Devon Ryan wrote: > Hi Katherine, > > Check the 'job_parameter' table, though you'll need to

Re: [galaxy-dev] Parameters out

Hi Katherine, Check the 'job_parameter' table, though you'll need to find the correct job ID from the 'job' table. Devon -- Devon Ryan, Ph.D. Email: dpr...@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany On Tue,

[galaxy-dev] Parameters out

Hi everyone, Does anyone know where parameters are being retrieved from the database during tool execution within Galaxy's files. I am trying to change a value in the database after the value has been retrieved. Thanks! Katherine ___ Please

Re: [galaxy-dev] how to create users through Galaxy API?

Thanks Nicola & Peter B., I was hoping we could script new-user creation like this, and that someone else had already done this with the Galaxy API (and Bioblend). This looks great! Thank you both, Peter C. On Tue, Aug 30, 2016 at 10:43 AM, Peter Briggs wrote: >

Re: [galaxy-dev] how to create users through Galaxy API?

Hello Peter Following on from Nicola's suggestion: a while ago I had a go at writing some command line tools using Bioblend to try and do some of my Galaxy admin tasks via the API, including creating new user accounts so I'd also recommend this route as much much easier than attempting to