Hello Stephanie,
I have just tested this on 16.07 and on `dev` branch of Galaxy and it works
for both in my case. Can you please check the browser's console for
javascript errors?
Thanks,
Martin
On Tue, Sep 13, 2016 at 10:22 AM Stephanie LE GRAS wrote:
> Hi there (again),
>
Hi Martin,
Thank you for your feedback. We don’t have any javascript errors…
Stephanie
De : Martin Čech
Date : mardi 13 septembre 2016 16:36
À : Stephanie Le Gras , "galaxy-dev@lists.galaxyproject.org"
Objet : Re:
Stephanie:
can you log in to usegalaxy.org or test.galaxyproject.org using Safari?
Also please try to login to your instance using Safari private window.
Martin
On Tue, Sep 13, 2016 at 11:33 AM Stephanie LE GRAS wrote:
> Hi Martin,
>
>
>
> Thank you for your feedback. We
Hi Keith,
> You say you can see the Apache instance from other machines on the network. I
> assume you are accessing your machine via its local IP address (something
> like 192.168.1.x); what happens when you try to access Galaxy via
> http://192.168.1.x:8080?
>
Yes I used my local IP and
Hi all,
I'm getting the following error when attempting to do a trackster
visualization:
Error: The requested genome file
(/vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len)
could not be opened. Exiting!
Couldn't open /vectorbase/web/Galaxy/galaxy/tool-data/shared/ucsc/chrom/?.len
If anyone was wondering, I ended up sending the name of the repeat to the
function in the code file which is a list of dictionaries and in the
dictionaries you have an index and the other parameters in the repeat so as
long as you know the name of the parameters you are golden.
On Fri, Sep 2,
I think you might need to update since I believe the trimmomatic tool uses
features that are not available in the 15.03 Galaxy workflow editor/engine.
M.
On Tue, Sep 13, 2016, 21:45 Amarathunga A. Dineli Karunath <
dineli_karunathil...@nuhs.edu.sg> wrote:
> Hi Martin,
>
>
>
> It’s 15.03.
>
>
>
Hi Martin,
It’s 15.03.
Regards,
Dineli
From: Martin Čech [mailto:mar...@bx.psu.edu]
Sent: Tuesday, September 13, 2016 10:31 PM
To: Amarathunga A. Dineli Karunath; galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Trimmomatic tool is not visible in the workflow editor
Hi Dineli,
what version of
I have installed Galaxy using this link :
https://bitbucket.org/apetkau/galaxy-dist/get/b065a7a.tar.gz I’m using Galaxy
along with an open source project so this instance is built specifically for
that project I guess. In that case do you know how I should update it?
Thanks,
Dineli
From:
Hi Dineli,
what version of Galaxy do you have installed?
thanks
Martin
On Tue, Sep 13, 2016 at 10:27 AM Amarathunga A. Dineli Karunath <
dineli_karunathil...@nuhs.edu.sg> wrote:
> Hi,
>
> I have a local galaxy instance and have installed many tools from the
> galaxy tool shed. Recently I have
Jochen,
Two quick questions for you:
You say you can see the Apache instance from other machines on the network. I
assume you are accessing your machine via its local IP address (something like
192.168.1.x); what happens when you try to access Galaxy via
http://192.168.1.x:8080?
I see you
I am indexing reference genomes for bowtie2/tophat2, using the
corresponding data manager. I am getting some successful indexes and others
are giving an error. For the successful ones I see the genomes are
appearing in the "built in index" drop down for both bowtie2 and tophat2.
For the
Hi there (again again),
The last problem we are facing is that sometime when clicking on a tool name in
the tool panel, the form don’t get displayed in the middle panel. We’ve checked
the log of galaxy and it seems that the HTML request arrives but nothing
happens.
We have noticed that this
Hi there,
I’m currently facing several problems with the galaxy instance I’m managing.
I’m going to send a mail per problem so sorry in advance : for flooding !
The first problem I’m facing is that we can’t download HTML datasets from
Galaxy. Here is the error I got when I try to do download
Hi there (again),
Another problem we are currently facing is that we cannot log in anymore on our
galaxy instance using Safari. It’s working with Firefox and Chrome but when we
are using Safari (with the right password and login) we just see a green box
saying that we successfully logged in
a2enmod adds an apache module to your list of enabled modules. Previously
enabled modules will remain enabled.
-Will
On Tue, Sep 13, 2016 at 12:10 AM, Jochen Bick
wrote:
> Hi Will and Ray,
>
>
> > You may need to load the mod_rewrite module. This can be done via:
> >
Hi Will and Ray,
> You may need to load the mod_rewrite module. This can be done via:
> sudo a2enmod rewrite
I will try that. Is this also resetting the modules of apache?
>
> -Will
>
>>
>> I presume you've restarted the web server after making this change?
>>
>> Apache's mod_rewrite (the
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