Re: [galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Eric Rasche
Hi Greg, On 11/30/2015 10:06 AM, Björn Grüning wrote: > Hi Greg, > > please have a look at: > > https://github.com/bgruening/galaxytools/tree/master/visualisations > > All these visualisations are self-contained. You can simply drag and > drop them into the plugin folder and it will work. So

Re: [galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Björn Grüning
Hi Greg, have a look here: https://github.com/bgruening/galaxy-rna-workbench/blob/master/Dockerfile#L11 > Thanks Bjorn, > > My visualization is here: > https://github.com/gregvonkuster/galaxy-csg/tree/master/visualizations/csg, > so can you provide your docker hack? > > In addition to

Re: [galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Greg Von Kuster
Thanks Bjorn, My visualization is here: https://github.com/gregvonkuster/galaxy-csg/tree/master/visualizations/csg, so can you provide your docker hack? In addition to including this into docker, I would like it to be available to Galaxy instances outside of docker. What is the general

[galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Greg Von Kuster
Hello Galaxy-devs, I’m preparing to contribute a Visualization plug-in to the Galaxy code via a PR, and I’m hoping someone can privide the details for how to prepare the Javascript files that will be included in the PR. 1) What is the process for compressing the Javascript files? 2) Looking

Re: [galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Björn Grüning
Hi Greg, please have a look at: https://github.com/bgruening/galaxytools/tree/master/visualisations All these visualisations are self-contained. You can simply drag and drop them into the plugin folder and it will work. So no need for a PR. I also have a hack for you to integrate this into a

Re: [galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Greg Von Kuster
Thanks for the hint on how to make this available in the Docker flavor Bjorn! ;) > On Nov 30, 2015, at 12:14 PM, Björn Grüning wrote: > > > Hi Greg, > > have a look here: > > https://github.com/bgruening/galaxy-rna-workbench/blob/master/Dockerfile#L11 > > >>

Re: [galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Greg Von Kuster
Thanks Eric, It seems to be the case currently that there is no way to easily share visualization plugins outside of using Docker, which is unfortunate. As an interim solution, would it work to allow visualization code to be added to the Galaxy code base via PRs? Otherwise, those that are

Re: [galaxy-dev] Error installing tools from toolshed

2015-11-30 Thread Scott Szakonyi
Nicola, Sorry for the delay... holidays here in the US. That worked perfectly... thank you very much! Best, Scott On Fri, Nov 20, 2015 at 1:59 PM, Nicola Soranzo wrote: > Hi Scott, > you can try to reinstall it with: "Admin" -> "Manage installed tools", > then click on