Re: [galaxy-dev] correctly installing to toolshed

Thank you! On Thu, Feb 25, 2016 at 7:50 PM, Karen Reddy wrote: > Thanks! > > Sent from Nine > > *From:* Gildas Le Corguillé > *Sent:* Feb 25, 2016 3:17 PM > *To:* Karen Reddy > *Cc:* Xianrong; Björn Grüning; Xianrong Wong;

Re: [galaxy-dev] AssertionError: there is no script for 130 version

Hey Bill, The only time I've seen this is when switching from (for example) tip of the 'dev' brach of Galaxy over to 16.01, 15.10, or some other stable release. Basically, sqlalchemy_migrate sees the 0130_change_pref_datatype.pyc (or some other one) and thinks a version should exist. The

[galaxy-dev] AssertionError: there is no script for 130 version

Hi, all, I am new to Galaxy. The following error was encountered when I tried to run Galaxy after getting PostgreSQL up: File "/home/galaxy/galaxy/eggs/sqlalchemy_migrate-0.9.6-py2.6.egg/migrate/versioning/version.py", line 204, in script "There is no script for %d version" %

[galaxy-dev] Lost prostgresql database

Hi All, Our server hard drive failed and we lost the database which was running galaxy instance. But we did NOT loose all the data i.e all the files are there under the /galaxy-dist directory. Is there a way to reconstruct the database using the data itself. Please help.

Re: [galaxy-dev] Query

Hi Chang-Hyuk, If you click on the bug icon for your error'd dataset you should be able to get the full traceback. Thanks for using Galaxy, Dan > Dear Sir, > > that is all of error message. > I attached the file to be tried. > > best regards, > Chang-Hyuk Yoo. > > 2016-02-25 오전 4:13에

Re: [galaxy-dev] Broken package_perl_5_18, was Re: JBrowse on dev branch: progress

I knew there was an email that I forgot to send! Nicola Soranzo fixed this with galaxy PR https://github.com/galaxyproject/galaxy/pull/1775 - sometime in November last year Eric added whitespace to the perl package (and a bunch of other things) that broke the download_file action, so Nicola's

[galaxy-dev] Broken package_perl_5_18, was Re: JBrowse on dev branch: progress

Hello Peter Re the failing install of 'package_perl_5_18', I've investigated further now and have submitted a patch which seems to fix the problem: https://github.com/galaxyproject/tools-iuc/pull/616 Not sure if this is of any immediate help, Best wishes Peter On 22/02/16 09:43, Peter van

Re: [galaxy-dev] Galaxy 16.01 Release

Thanks a lot Nate! You are right! yum install mariadb-devel did the trick. Cheers, Makis From: n...@bx.psu.edu Date: Thu, 25 Feb 2016 10:12:51 -0500 Subject: Re: [galaxy-dev] Galaxy 16.01 Release To: makis4e...@hotmail.com CC: galaxy-dev@lists.galaxyproject.org On Thu, Feb 25, 2016 at 2:49

Re: [galaxy-dev] Collapse tool panel and history panel

Hi Makis, if you change the javascript in client/ ... you need to run grunt. The instructions are in https://github.com/galaxyproject/galaxy/blob/dev/client/README.md. Cheers, Marius On 25 February 2016 at 10:57, Makis Ladoukakis wrote: > Just an update/bump of the

Re: [galaxy-dev] Collapse tool panel and history panel

Just an update/bump of the issue. With the new 16.01 version I made the changes in the /client/galaxy/scripts/apps/analysis.js b/client/galaxy/scripts/apps/analysis.js file but the none of the panels were collapsed even when i restarted my Galaxy instance. I don't really get the mechanics