Re: [galaxy-dev] GalaxyAdmins Online Meetup 15 December

Hi All, If you missed this, the video for it is now online . The video for Nick Hazekamp's August talk on Dynamic Job Expansion: Experiences using Makeflow in Galaxy is now online too

[galaxy-dev] Dump SQlite to mySQL

Is there a script someone has designed to properly dump the galaxy sqlite database to a mySQL database? ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy

[galaxy-dev] Dataset Cleanup

Hello Everyone, I have datasets that go back over a year in the files/000 directory but running the following script does not delete the datasets. Also, my account says I have 59 GB used and can't figure out where it's getting that number. I have almost everything deleted in my Galaxy account.

Re: [galaxy-dev] psycopg2 module and SSL connection to postgresql

I don't know what the particular issue is - I do know that after a lot of trial and error we were able to get Postgres + SSL working at MSI before I left my previous job there - so there is hope. I will say however, upgrading even to one newer Galaxy - namely 16.01 might solve this issue. We re-di

Re: [galaxy-dev] GIE security implications

Hi Ido, every IE or the underlying Docker container can be different and this has implications about security. Assuming that you every user are root inside Docker, and you can break out of Docker, this is the attack surface. To make it more clear, the IEs are as dangerous as Docker is, or the Do

[galaxy-dev] GIE security implications

Hi, what are the security implications of GIE? I saw the overview on the GIE page, but its not clear to me how dangerous they are. "They have complex interactions with numerous services, you’ll need to be a fairly competent SysAdmin to debug all of the possible problems that can occur during dep