I had the same issue.
Thanks to Marius van den Beek's help we figured out it was due to a known
bug and, since I was running from *master* instead of the release branch,
although it had been fixed, the fix hadn't been backported to the
*master *branch
yet.
So changing branch:
git checkout
Dear Galaxy list,
I am interested in Galaxy Charts visualization.But venn diagram confuses me
when I upload my tabular data, it seems venn diagram need one column
observations
at least, actually I don't clear what should be contained in the one column
observations.
So is there any venn diagram
In general, see if the new package is available in conda-forge or
bioconda. If so, you just need to mention it in the requirements
section of the tool XML.
--
Devon Ryan, Ph.D.
Email: dpr...@dpryan.com
Data Manager/Bioinformatician
Max Planck Institute of Immunobiology and Epigenetics
Stübeweg 51
Hello Devon,
Thank you very much for your quick answer. In fact in my tool_dependencies.xml
I did not put the '#':
https://pypi.python.org/packages/31/43/ab9535c416faabd1865453389260fdad0a23a714609c13112885009a/numexpr-2.6.2.tar.gz
The log has been sent
You can remove everything starting with the "#" in the URL, though I
presume that's not the problem. Have a look in the installation log on
your machine, perhaps there's an error message somewhere in it.
More conveniently, though, numexpr-2.6.2 is available in conda-forge,
so if you use conda as
I'm sorry,
I forgot to add the error log:
/slipstream/galaxy/production/dependencies/python/2.7.10/iuc/package_python_2_7_10/a28e3c30828d/lib/python2.7/distutils/dist.py:267:
UserWarning: Unknown distribution option: 'setup_requires'
warnings.warn(msg)
Dear Galaxy list,
I do not know if it is the right place to ask my question. I would like to
create a tool dependency package for numexpr (a python library).
I tried to do it taking examples from different tool dependency packages from
iuc for example.
I added my repository to the
