here -- I'll get a fix out shortly.
-Dannon
On Mon, Dec 8, 2014 at 7:23 AM, Ulf Schaefer ulf.schae...@phe.gov.uk
wrote:
Dear Galaxy Dev
One of our users has managed to lock himself out of his Custom Builds.
An 'Internal Server Error' appears and this shows up in the web process
log
Hi all
For what it's worth, I manually installed mock (and pycrypto because
that was the next thing it complained about) and it worked after that.
Ulf
On 14/01/15 14:23, Ulf Schaefer wrote:
Hi all
After the announcements this morning, I upgraded to the latest stable
release as suggested
>
> python
>
>
> And you have to include tool_dependencies.xml file which will look
> something like:
>
>
>
>
> prior_installation_required="True" />
>
>
>
> Please let me know if you have more questions.
>
> M.
>
> On Tue, Dec 1, 20
18d3d
>>
>> You will need to add to your wrapper's xml something like:
>>
>>
>> python
>>
>>
>> And you have to include tool_dependencies.xml file which will look
>> something like:
>>
>>
>>
>>
>> > p
(to me).
Thanks for any pointers and sorry if this has been answered some place I
did not look.
Cheers
Ulf
--
Ulf Schaefer, PhD
Bioinformatics Scientist
Bioinformatics Unit - Infectious Disease Informatics
National Infection Service
Public Health England
61 Colindale Ave, London NW9 5EQ
ulf
randomly with any
> tool? or are they all coming from the same tool?
>
>
> Regards, Hans-Rudolf
>
>
>
>
> On 07/25/2016 12:48 PM, Ulf Schaefer wrote:
>> Hi all
>>
>> Certain jobs fail on my cloud Galaxy instance with the error message in
>> the subject
Hi all
I installed an out-of-the-box Galaxy instance on my local machine as per
the instructions (https://wiki.galaxyproject.org/Admin/GetGalaxy). I
have made minimal adjustments beyond making myself an admin.
When I run a workflow in batch mode on 10 data sets it appears to
running 5
>
> https://wiki.galaxyproject.org/Admin/Config/Jobs
>
>
> Regards, Hans-Rudolf
>
>
>
> On 07/14/2016 01:35 PM, Ulf Schaefer wrote:
>> Hi all
>>
>> I installed an out-of-the-box Galaxy instance on my local machine as per
>> the instructions (https://
:
Hi Ulf,
you can set a virtualenv to be used in your job_conf.xml file.
The following line would go into the `` tag:
``
Best,
Marius
On 25 October 2017 at 16:56, Ulf Schaefer <ulf.schae...@phe.gov.uk
<mailto:ulf.schae...@phe.gov.uk>> wrote:
Hi again
Update, sorry
python version from the virtual env. Needless to say
I can import json just fine using that python version. Any ideas?
Any help is greatly appreciated.
Thanks
Ulf
--
Ulf Schaefer, PhD
Bioinformatics Scientist
Bioinformatics Unit - Infectious Disease Informatics
National Infection Service
Publ
ug 9 2016, 06:11:56)
[GCC 4.4.7 20120313 (Red Hat 4.4.7-17)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import json
>>>
Does anyone have an idea how I can stop this from happening? Where is
th
October 2017 at 18:24, Ulf Schaefer <ulf.schae...@phe.gov.uk
<mailto:ulf.schae...@phe.gov.uk>> wrote:
Hi Marius
This is very useful, but not quite there.
I use in my job_conf.xml
/this/is/a/test
and I end up with this
PATH=/phengs/hpc_
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