Dear list,
Is there somewhere in the Galaxy any running example of a planemo test
embracing a from_data_table option ?
We are trying to reproduce the picard example referenced here:
nice to develop !
I would be glad to help.
Thank a lot
Fred
*De :*galaxy-dev
[mailto:galaxy-dev-boun...@lists.galaxyproject.org
<mailto:galaxy-dev-boun...@lists.galaxyproject.org>] *De la part
de* Peter Cock
*Envoyé :* mardi 12 septembre 2017 14:56
*À :*
Hi Peter,
Thank you for your answer. Maybe I should try your option below :
Le 12/09/2017 à 14:56, Peter Cock a écrit :
I can't find the email thread, but I recall someone previously trying
to do something with a single large example.loc file for all users
but with an extra column for
Hello Galaxy users,
I try to figure out how I can display a select list into a galaxy tool
according to the connected user.
I have several .loc files containing the paths for custom blast
databases I have created for several users (user1.loc, user2.loc, and so
on). I would like the blast
Hi Gildas,
Have a look here :
https://github.com/martenson/dagobah-training/tree/master/advanced/002a-systemd-supervisor
See ya.
Laure
Le 14/11/2016 à 21:35, Gildas Le Corguillé a écrit :
Hi,
Since Galaxy need to be restarted sometime (load datatype, add
ressources in .loc, apply changes
Hi Galaxy users,
As somebody try to run dynamic runner with the option
embed_metadata_in_job set to False ?
I notice that it works with drmaa runner but not with dynamic.
Here is my job_conf.xmf :
python
my_conf
False
Hi galaxy users,
while using galaxy with drmaa and real user on drm system, I would like
to know if there's a way to set the variable PBS_O_LOGNAME to the real
user name in the job_conf.xml :
-v PBS_O_LOGNAME=[REAL_USER_NAME??] -q
test -l mem=100gb
Thank you,
Laure
Hi there (sorry for all theses questions),
when I execute a job with remote user drmaa configuration on our pbs
cluster, I see in the job working directory the script the galaxy_XXX.sh
which set the galaxy virtual env and execute set_metadata.py after
tool_script.sh completion but I get this
and will try to figure out what's going on and
let you know when I have a fix.
-Dannon
On Tue, Apr 19, 2016 at 3:07 AM, Laure QUINTRIC
<laure.quint...@ifremer.fr <mailto:laure.quint...@ifremer.fr>> wrote:
Hi galaxy users,
I just installed version 16.04
Hi galaxy users,
I just installed version 16.04 of galaxy. I can connect to galaxy with
remote user through CAS authentification but my session is invalidated,
I get this message in the history :
An error occurred while getting updates from the server. Please contact
a Galaxy administrator if
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