[mailto:bjoern.gruen...@gmail.com]
Sent: Thursday, January 05, 2017 9:43 AM
To: McCully, Dwayne (NIH/NIAMS) [C] <dmccu...@mail.nih.gov>;
galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] Dataset Cleanup
Hi,
this script only deletes files that are marked as deleted. So it
Hello Everyone,
I have datasets that go back over a year in the files/000 directory but running
the following script does not delete the datasets.
Also, my account says I have 59 GB used and can't figure out where it's getting
that number. I have almost everything deleted
in my Galaxy account.
Hello Everyone,
Uploading a file does not complete with a listing of the file in the history
section. The file upload does reach 100 percent.
I'm getting the below error In my pastore.log file.
galaxy.tools ERROR 2015-10-30 11:00:53,471 Checking parameter files failed.
'UploadDataset'
Hello Everyone,
Uploading a file does not complete with a listing of the file in the history
section. The file upload does reach 100 percent.
Files are successfully being upload but not displayed.
I'm getting the below error In my pastore.log file.
galaxy.tools ERROR 2015-10-30 11:00:53,471
Hello Everyone,
Is there an example of the auth_config.xml for a MS Active directory connection?
I would like to all my users to register and login to Galaxy with their AD
username and password.
Note: We don't use a "@example.com" extension for our usernames just "username".
Thanks in advance
: Tuesday, October 13, 2015 1:44 PM
To: McCully, Dwayne (NIH/NIAMS) [C] <dmccu...@mail.nih.gov>;
galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] MS Active Directory Authentication
Hi Dwayne,
see https://github.com/galaxyproject/galaxy/blob/dev/config/auth_conf.xml.sample
When running a Tophat job for over a hour, I get the following message and the
job stops.
Would anyone know why and is there a way to stop Galaxy from cleaning up the
job working
directory so that I can check the error log files?
Dwayne
galaxy.jobs.runners.local DEBUG 2015-07-14 16:54:10,478
Hello Everyone,
Performed a data retrieval using the rsync method for mm10 and also downloaded
the .loc files per the Data Integration page
to the tool-data directory. The paths match in the .loc file for bowtie2 of
the mm10 download directory.
My problem is that I'm not seeing mm10 in the
