[galaxy-dev] code tagset in tools

2015-04-29 Thread Simon Gladman
Hi dev, Now that the code tagset is deprecated, how do we replace that functionality. For example the get microbial data tool runs the script listed in the code tagset to load the list of available microbe data when the tool is selected. This doesn't seem to work in the latest stable 15.03.1 or

Re: [galaxy-dev] code tagset in tools

2015-04-29 Thread Peter Cock
On Wed, Apr 29, 2015 at 6:33 AM, Simon Gladman simon.glad...@unimelb.edu.au wrote: Hi dev, Now that the code tagset is deprecated, how do we replace that functionality. For example the get microbial data tool runs the script listed in the code tagset to load the list of available microbe data

Re: [galaxy-dev] code tagset in tools

2015-04-29 Thread Simon Gladman
Hi Dan, Thanks for the reply and the suggestions. I think the data libraries would work much better than the get_microbial_data tool as then it would be more easily kept up to date. Cheers, Simon. On 30 April 2015 at 01:01, Daniel Blankenberg d...@bx.psu.edu wrote: The code tag won’t be

Re: [galaxy-dev] code tagset in tools

2015-04-29 Thread Daniel Blankenberg
The code tag won’t be going away any time soon, but in many cases there are other ways to do what this tag does, using the built-in dynamic options (in particular, currently for tab-delimited files), that are much preferred. So it is deprecated, and it should be used sparingly, but there are