Hi,
I found the source of the tools. I think.
tool_conf.xml.sample from release_18.05 contains this:
There are the four tools. If I delete the section entirely, they disappear from
the dependencies list.
Since those tools weren't
Hi Gudrun,
it seems this PASS tool is not yet available as Conda package.
Do you know which ToolShed repo this is, you might want to contact the
developer and ask for an upgrade to conda.
> I don't know where they come from, I didn't install them explicitly.
This is scary. Can you
Hi,
I have those four tools, too. And they won't install properly. I don't know
where they come from, I didn't install them explicitly. They just popped
up in my dependencies list. I've chosen to ignore them, since they don't seem
to cause any trouble. But if anyone had this problem too and
To: Tom Misilo
Cc: galaxy-...@bx.psu.edu
Subject: Re: [galaxy-dev] Installing Tool Dependencies
Hello Tom,
that page is very very outdated and I wouldn't trust it. Do you have any
specific tools from that list that are giving you trouble? If not then I would
ignore it completely.
Majority
kages.
>
>
>
> Thank you!
>
> Tom
>
>
>
> *From:* Martin Čech
> *Sent:* Monday, July 16, 2018 12:42 PM
> *To:* Tom Misilo
> *Cc:* galaxy-...@bx.psu.edu
> *Subject:* Re: [galaxy-dev] Installing Tool Dependencies
>
>
>
> Hello Tom,
>
>
>
> that
Hello Tom,
that page is very very outdated and I wouldn't trust it. Do you have any
specific tools from that list that are giving you trouble? If not then I
would ignore it completely.
Majority of the tools are now installed through the Toolshed and
dependencies are auto-managed by Galaxy's own
Hello,
I am trying to help a research here at Florida Tech setup Galaxy locally to
process their data. However, I am running into a problem installing some tool
dependencies was on this page
(https://moin.galaxyproject.org/Admin/Tools/ToolDependencies).
For example, I am trying to install
Hej Marius,
> what version of galaxy are you running?
we are running 15.10 but it will be updated next Monday.
> When you are doing this you should have a traceback in your logs,
> this would be helpful to understand what is going on.
ok I will check the logs for the error.
>
> When you say
Hello Jochen,
what version of galaxy are you running?
When you are doing this you should have a traceback in your logs,
this would be helpful to understand what is going on.
When you say "I installed a bunch of tools at the same time",
did you really trigger multiple installations at the same
Hi,
I installed a bunch of tools at the same time and ran into some errors.
After repairing those tools some of the dependencies installations did
not work. If I try to repair the tools again I also get this error message:
Internal Server Error
Galaxy was unable to successfully complete your
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