Re: [galaxy-dev] Using pbs-python with glibc version 2.12

Hi David, It looks like this is an issue with pbs_python and Torque 4.x. There's a workaround available: https://oss.trac.surfsara.nl/pbs_python/ticket/40 --nate On Fri, Nov 18, 2016 at 6:06 AM, David Lee wrote: > Hi Nate, > > Thanks for your help. I now get the

Re: [galaxy-dev] Using pbs-python with glibc version 2.12

Hi Nate, Thanks for your help. I now get the following error message: (.venv)[galaxy@newblue3 ~]$ python Python 2.7.5 (default, Oct 16 2013, 10:52:17) [GCC 4.4.7 20120313 (Red Hat 4.4.7-3)] on linux2 Type "help", "copyright", "credits" or "license" for more information. >>> import pbs Traceback

Re: [galaxy-dev] Using pbs-python with glibc version 2.12

Hi David, It sounds like you may have installed the version of pbs-python currently in PyPI, which includes a copy of the Torque C library that is not "manylinux"-safe (it is not backwards compatible to older systems). The solution here is to install pbs-python from its source distribution: 1.

[galaxy-dev] Using pbs-python with glibc version 2.12

Hi, I'm trying to install Galaxy version 16.07 on a cluster with the PBS job scheduler that is using glibc version 2.12. The following error message suggests that pbs-python needs at least glibc version 2.14 - assert pbs is not None, PBS_IMPORT_MESSAGE AssertionError: The Python