Hello George,
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On 2/19/11 10:51 AM, George Marselis wrote:
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Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org
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To
Is there a tool for doing a global or column-based substitution in a text or
tabular file? For example, replace all instances of the number 2 in a column
to a number 1?
David Hoover
Helix Systems Staff
http://helix.nih.gov
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To manage your
We run a local galaxy instance with multiple galaxy web servers and a job
runner. Per the wiki suggestion we have two config files:
universe_wsgi.webapp.ini and universe_wsgi.runner.ini. I've noticed that we
still need universe_wsgi.ini or else galaxy will not start
Instead of maintaining
Glen Beane wrote:
We run a local galaxy instance with multiple galaxy web servers and a job
runner. Per the wiki suggestion we have two config files:
universe_wsgi.webapp.ini and universe_wsgi.runner.ini. I've noticed that we
still need universe_wsgi.ini or else galaxy will not start
Hi
Does anyone have an updated tool-runner .XML and .py for MACS 1.4? It
looks like Galaxy uses an older version of MACS.
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Moving this to the galaxy-dev mailing list since it's about a local Galaxy
installation.
The error here is likely a misconfigured tool_data_table_conf.xml. The format
of this file has changed, see the tool_data_table_conf.xml.sample for an
example of the new structure. Let me know if your
I should have held onto that email a second longer. Also see the bowtie .loc
files referenced in your tool_data_table_conf.xml, likely in
tool-data/bowtie_indices.loc (and the corresponding .sample) to see that they
match the new format.
-Dannon
On Feb 23, 2011, at 2:38 PM, Dannon Baker
Hello,
I am having some trouble compiling SAMtools on a Solaris10 X86 p latform using
gcc compiler version 3.4.6. Using the Makefile I get some link errors and have
not been successful in creating the binary or the associated libraries. It
seemed to me that it was missing the socket library.
Ry4an Brase wrote:
I'm working on getting more of our jobs offloaded to other machines, and
I'm getting job failures I'm not able to debug. When running a simple
tool like 'cut', submitted over qsub, I'm getting STDERR output like
this:
WARNING:galaxy.datatypes.registry:Error loading
