Hello Jennifer,
Thanks for your quick answer,
I would like to upload large fasta files and make it available to the user
interface for analysis with galaxy tools.
I will have a look at the uploading/data librairies wiki page here :
https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/Upl
My fasta data are now integrated and available,
If you encounter the problem, follow the wiki link :
https://bitbucket.org/galaxy/galaxy-central/wiki/DataLibraries/UploadingFiles
I specify the location path of my data source in the universe_wsgi.ini file
: as
library_import_dir = /my/data/locati
Hi,
I am creating a tool that provides the user with different input
options based on the format of the input file. I have a conditional
statement:
Type1
Type2
Type3
etc.
There is overlap between the options available for each file t
Fixed in the tool sheds, Peter - thanks
On Jul 4, 2011, at 11:13 AM, Peter Cock wrote:
> Hi all,
>
> I see there has been some work done on the new tool shed to support
> long descriptions again (a regression):
> https://bitbucket.org/galaxy/galaxy-central/changeset/372577e7bc6a
>
> However, th
Hi Leandro,
Thanks! I had to change one line to get it working:
...
#for $i in $add_inputs
${i.extra_table.file_name}
#end for
Now galaxy will provide a list of files as the last parameters to the
script.
Best,
Kip
On Fri, Jul 1, 2011 at 3:53 AM, Leandro Hermida
Hello Peter,
On Jul 4, 2011, at 11:20 AM, Peter Cock wrote:
> Hi all,
>
> I've noticed some inconsistencies in the new tool shed. First of all
> the table view uses "Name" and "Description" for fields shown as
> "Name" and "Synopsis" on the tool details page.
Fixed in the next update to the too
Hello Colin,
There are a few things to double check:
1 - database has been assigned and that database is an existing UCSC
Genome Browser genome. You can double check this at http://genome.ucsc.edu
2 - dataset file type is set as BAM, resulting in a dataset extension
".bam". Most likely this
