Hi Galaxy team,
I created a new repository on the tool shed called "test", I wanted to
see what steps were required to publish a tool before I go ahead and
release the production version. I then tried to change the name of the
repository and got a server error.
When I search for test, tr
Hello Shaun,
On Jul 12, 2011, at 6:07 AM, SHAUN WEBB wrote:
>
> Hi Galaxy team,
>
> I created a new repository on the tool shed called "test", I wanted to see
> what steps were required to publish a tool before I go ahead and release the
> production version. I then tried to change the name o
Shaun, I forgot to mention, if you want to just fool around with tool shed
features, check out the test version of the tool shed at
http://testtoolshed.g2.bx.psu.edu/
On Jul 12, 2011, at 10:24 AM, Greg Von Kuster wrote:
> Hello Shaun,
>
> On Jul 12, 2011, at 6:07 AM, SHAUN WEBB wrote:
>
>>
>
Hi Shantanu,
Thanks for the report. Is there any pattern to the files being marked
as empty? Certain filetype or histories?
-K
On Mon, Jul 11, 2011 at 3:07 PM, Shantanu Pavgi wrote:
>
> Hi,
>
> In our local galaxy install (currently revision 50e249442c5a) we are seeing
> few output datasets as
Good Morning,
I am getting a big problem with our production server when I upgrade to the
latest change set (it was quite out of date). I have attached quite a long
paster output to try and show whats going on,
Our galaxy instance no longer seems to run jobs at all, they are not allocated
a jo
Dear Galaxy Team -
We stumbled across a potential bug in the toolExample.pl script on the Galaxy
Add Tool Tutorial today:
http://wiki.g2.bx.psu.edu/Admin/Tools/Add%20Tool%20Tutorial
In our hands, this script only works on fasta files that contain >1 sequence,
and reports gc content only for th
Thanks Greg, could you delete the repository I created please?
I guess that step isn't necessary as most people won't create
repositories until they are ready to go. It would stop curious users
like me creating empty repositories by just clicking buttons..
Is there more documentation on wh
On Jul 12, 2011, at 11:54 AM, SHAUN WEBB wrote:
>
> Thanks Greg, could you delete the repository I created please?
Are you eventually going to use your repository? If you are planning to never
upload a tool, I'll delete it. Otherwise, I'll leave it active so you can
eventually use it.
>
>
I am, but I would like to be able to change the category. It will be
an RNA-seq tool.
Shaun
Quoting Greg Von Kuster on Tue, 12 Jul 2011 12:38:08 -0400:
On Jul 12, 2011, at 11:54 AM, SHAUN WEBB wrote:
Thanks Greg, could you delete the repository I created please?
Are you eventually g
Casey:
Indeed. Will fix shortly.
a.
Anton Nekrutenko
http://nekrut.bx.psu.edu
http://usegalaxy.org
On Jul 12, 2011, at 11:51 AM, Casey Bergman wrote:
> Dear Galaxy Team -
>
> We stumbled across a potential bug in the toolExample.pl script on the Galaxy
> Add Tool Tutorial today:
>
> http
You can now manage your repository's category associations in the tool shed.
On Jul 12, 2011, at 12:54 PM, SHAUN WEBB wrote:
>
> I am, but I would like to be able to change the category. It will be an
> RNA-seq tool.
>
> Shaun
>
Greg Von Kuster
Galaxy Development Team
g...@bx.psu.edu
___
Hello all,
Galaxy will have a large presence at ISMB/ECCB, 3DSIG, and BOSC, all of
which start this week in Vienna. Galaxy related content includes (at
least):
1 Galaxy organized workshop on "Genomics for Non-Model Organisms"
featuring 4 talks,
7 additional talks at ISMB/ECCB and BOSC, and
Hi Greg,
Another small patch for cleanup_datasets.py, that makes the output messages
slightly more informative.
The changes are:
1. If a dataset is skipped (because it's shared/cloned and was already
process), no message is printed at all.
2. If a dataset can not be deleted because it is shared
As to how to figure out the id for copying, there isn't an exposed method for
doing this. If you're willing to do a little work to decode it, you can do the
following in python.
For the encoded id (the "b701da857886499b" portion that you see in a dataset
url "/galaxy/datasets/b701da857886499b/
Hello Marshall,
Apologies for the delay in reply, we have been restructuring our
community shared tool area and wanted to have that going before we sent
you instructions.
The first step in submitting a new tool/set of tools would be to create
a wrapped version and adding it to the Tool Shed
15 matches
Mail list logo
