Hello evyerbody,
i guess this question has already been answered, but i didn't find any :/
Is there a way to reload a tool file from the command line ? I'd like to
automate the process when a user upload a new version of an existing
tool. Am I reinventing the wheel here, is there something alr
Yeah, not possible now. Ilya, running in a controlled environment you
can just have the wrapper read the number of allocated processors from
the environment once it's scheduled and run.
--nate
Glen Beane wrote:
>
> On Sep 14, 2011, at 2:07 PM, Chorny, Ilya wrote:
>
> It’s easy to hard code in
Timothy Wu wrote:
> On Thu, Sep 15, 2011 at 5:32 PM, Timothy Wu <2hug...@gmail.com> wrote:
>
> > On Thu, Sep 15, 2011 at 4:58 PM, Peter Cock
> > wrote:
> >
> >> On Thu, Sep 15, 2011 at 9:32 AM, Timothy Wu <2hug...@gmail.com> wrote:
> >> >
> >> > I think I need some kind of "data source" implement
Jerico Nico De Leon Revote wrote:
> Hi,
>
> I've a setup a local instance of galaxy in our server using
> PostgreSQL/nginx.
> I've followed the instructions from the production server configuration as
> stated from here:
>
> http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server.
mallika V wrote:
> hi
> I am very new to the galaxy software. I have to convert one fastq file of
> nearly 5 gb size and unable to do that. i tried to install galaxy in locally
> but it tells some eggs are out of date. Can anyone plz help me in this
> regard
Hi,
With respect to the public version
Glen Beane wrote:
> We recently updated to the latest galaxy-dist, and learned that the
> sam_merge.xml tool now uses picard MergeSamFiles.jar to merge the files
> instead of the samtools merge wrapper sam_merge.py.
>
> this is a problem for us because MergeSamFiles.jar does not honor $TMPDIR
>
I'm running a local instance of Galaxy that has been working quite
well. However, I've recently run into a problem when importing datasets
from a data library into a history. The Size on Disk of the history
grows by the size of the imported dataset, however, the new dataset is
not visible (an
I apologize for responding to my own email, but I thought others might want to
know.
This turned out to be a Safari-dependent problem. Lots of other people have
complained, but there doesn't seem to be any direct fix.
My quick solution was to make sure the downloaded file is gzipped. This kil
Hi Greg,
Has Steve's gls script made it into ~/contrib of the Galaxy distribution?
I'd love to try it out as I'm having issues with the helper.py script giving
me false IDs.
Thanks,
Matt
On Fri, Sep 2, 2011 at 9:18 AM, Greg Von Kuster wrote:
> Hello Steve,
>
> Thanks for making this available
Hello Matt,
Steve's script has not yet made it to the distribution, although it should be
available there within the next few weeks. If you need it sooner, you'll have
to pull it from galaxy central. Sorry for the inconvenience.
Greg Von Kuster
On Sep 27, 2011, at 4:18 PM, Matthew Conte wrot
Joe Harrison wrote:
> Hello -
>
> I am a microbiologist and I am attempting to set up a a local
> instance of Galaxy. I'm very green with the Linux environment! So
> you will have to pardon a very naive question from a biologist...
>
> I have installed VirtualBox on my PC and I am currently run
Hi Hans (and all),
Thank you for the recommendation. I wasn't even aware of this feature--it
is exactly what our site needs.
But I have yet been able to successfully transfer a history this way.
I've tried various permutations of importing/exporting to/from our site
and galaxy (http://main.g2.b
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