Thanks for your suggestion, Hans-Rudolf. Unfortunately, no success.
Looking into it bit deeper. Keep suggestions coming ;-)
Joachim
On 11/08/2012 05:00 PM, Hans-Rudolf Hotz wrote:
Hi Joachim
This might be completely unrelated, but your situation reminds me of
our case when we did the last
Hi all,
I would find the New Galaxy tool shed repository alert more useful
if the important details were at the start of the message, so this is
shown in the 'peek' text of my email client (in this case, GoogleMail).
Perhaps going further the new repository's name could be in the
title?
Thanks,
Hi Derrick,
On Nov 9, 2012, at 12:56 AM, Derrick Lin wrote:
For issue 1), so I think it's safe to remove the
tool-data/tool_data_table_conf.xml
tool-data/tool_data_table_conf.xml.sample since they are not used?
Yes, the ~/tool-data/tool_data_table_conf.xml.sample and
On Mon, Jul 16, 2012 at 7:07 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Mon, Jul 16, 2012 at 6:10 PM, Espin, Almudena
a.p.almud...@cranfield.ac.uk wrote:
Hi guys,
I am writing a wrapper for makeblastdb. The problem is that
Galaxy doesn’t support the blastdb data format, so this has
Hi Folks,
I received an email from one of my end users that she was having an issue with
the Realigner Target Creator under NGS: GATK Tools. Here's the error: An
error occurred running this job: Unable to access jar file
Ok, I've found the solution. sam_fa_indices.loc contained relative paths. When I changed to absolute
paths it worked.
regards, Murple
On 02.11.2012 09:26, Andreas Kuntzagk wrote:
Oh,
I forgot to mention it:
hg18.fa.fai is already in tool-data/shared/ucsc/hg18/sam_index/ as a link to
On Nov 7, 2012, at 5:47 AM, Diam Hsu wrote:
Dear Sir or Madam,
I used to use Galaxy to analyze NGS data, but these two days I could't login
my Galaxy account, it also told me that my account has been marked deleted,
and asked me to contact the Galaxy administrator to restore my
Dear all,
I would like to know if it is possible to manage libraries permissions
with the API galaxy, and how to do that.
Thank you for your answer,
Best regards,
Fabien Mareuil
--
Fabien Mareuil | Centre d'Informatique pour la Biologie
fabien.mare...@pasteur.fr | Institut Pasteur
25,28 rue
Dear Sir or Madam,
I am having difficult loading files onto my local galaxy instance. I
have given myself admin status, but when I attempt to add files to a new
library, I get the following message:
Error attempting to display contents of library (New data library):
(OperationalError) no
You can determine what revision you have by running hg tip in the
galaxy checkout. Are you checking out from galaxy-dist or
galaxy-central?
--
James Taylor, Assistant Professor, Biology/CS, Emory University
On Thu, Nov 8, 2012 at 10:41 AM, John Clayton
j.clay...@ibmc-cnrs.unistra.fr wrote:
How
Hello Mathieu,
What version of Galaxy are you running? Also, I cannot read the stack trace
from your pasted image, so can you send a text version of the complete stack
trace from your paster log?
Thanks,
Greg Von Kuster
On Nov 9, 2012, at 11:26 AM, Mathieu Bahin wrote:
Hi,
I am using
Can you please verify that you're running the most recent dist?
In the most recent dist, requireJS modules are used, so Dataset is prefixed
with its module, e.g.
Hi Guys,
I updated to the latest galaxy distribution today and I cant seem to edit
existing workflows. I've seen others with this error from a Sept 07
distribution (
http://dev.list.galaxyproject.org/Can-t-edit-Galaxy-Workflow-ElementInterface-instance-has-no-attribute-render-td4656393.html),
but
Are there any docs or examples about how to add/remove tags from items
via the galaxy web-api?
Thanks,
Kyle Ellrott
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