OK, will let you know. Update planned for next week.
Cheers,
Joachim Jacob
Rijvisschestraat 120, 9052 Zwijnaarde
Tel: +32 9 244.66.34
Bioinformatics Training and Services (BITS)
http://www.bits.vib.be
@bitsatvib
On 01/14/2013 06:40 PM, Jeremy Goecks wrote:
I think this bug has been fixed in t
Hi all,
One of our users had a problem, that the subtract datasets tool did not
behave.
She had just uploaded two datasets, one column each (actually in txt
format), one with ~30 lines, another with 106, and used the subtract
tool.
It did not work because of trailing white spaces (spaces
On Mon, Jan 14, 2013 at 4:13 PM, Sveinung Gundersen
wrote:
> Hello all,
>
> We are wondering if it is possible to activate anonymous use of the workflows
> and the visualization (trackster) features of Galaxy, somehow?
>
> This is a strict requirement for the acceptance of our new paper in a
> sp
> I'd also been been worried about a similar requirement to ensure reviewers
> could have anonymous access to software run as a service. In that case
> even providing dummy accounts to the reviewers might not have been
> allowed (since the administrator could easily 'spy' on what the reviewers
> di
On Jan 14, 2013, at 11:45 PM, Shantanu Pavgi (Campus) wrote:
>
> On Jan 9, 2013, at 12:41 PM, Nate Coraor wrote:
>
>> Hi Shantanu,
>>
>> The code in question is actually in the upload tool,
>> tools/data_source/upload.py. In general, you should be able to minimize the
>> number of copy and d
In our case someone had installed and started a second development
instance of galaxy but used the same database as the first development
instance. So the ids were mixed up and and causing some jobs to crash.
Yuck!
Thanks,
Liisa
From: Nate Coraor
To: Liisa Koski
Cc: kellr...@soe.
Even for a small change a pull request is preferred since they allow the
origin of the change to be tracked.
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James Taylor, Assistant Professor, Biology/CS, Emory University
On Mon, Jan 14, 2013 at 11:03 PM, Anthonius deBoer wrote:
> Hi,
>
> I just updated to the lates
I installed a local Galaxy server with Apache proxy, kerberos authentication
and submitting to a cluster with DRMAA. Everything works great, so far.
Sequence data is NFS mounted on the Galaxy server and all cluster nodes at
/shared/ngs/. I would like to configure one Data Library for each
lab
Hello all,
Our local Galaxy server had been running happily under SGE, using
one of the last free releases (not sure exactly which - I could ask).
Due to concerns about long term maintenance, the SysAdmin has
moved us to an SGE compatible setup - Univa Grid Engine (UGE).
However, in at least one
Having followed the directions in "HostingALocalToolShed" I ran
run_community.sh with the default configurations in community_wsgi.ini. It
executed without error but failed to start the tool shed as
http://127.0.0.1:9009 returns "Unable to Connect" error
Thanks for your help
Mark
This m
Hi Mark,
What version of Galaxy are you running, and what does your tool shed paster log
show?
Greg Von Kuster
On Jan 15, 2013, at 5:49 PM, wrote:
> Having followed the directions in “HostingALocalToolShed” I ran
> run_community.sh with the default configurations in community_wsgi.ini. It
Hi
Sorry if these questions are obvious but I just don't know how to find the
answers.
I'm trying to get one of the API examples to work in
http://wiki.galaxyproject.org/Learn/API/Examples .
I've got my API key but how do I get/find the workflow id (f2db41e1fa331b3e in
the examples). I've
Hi,
First it started with the error message: self.check_version_conflict(). So
I use the virtualenv as instructed in wiki. But I got a new error: ImportError:
No module named rpy/numpy... I will not have this importerror if I dont
use the virtualenv. How to solve this problem?
Thanks,
Huayan
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