Hi David
Using "Data Libraries", as suggested by Martin is definitely the way to
go. Especially if you want to use the files with different tools.
However, if you have a predefined set of tools, you might wanna consider
adding an extra tools which reads and process the files, eg: you have
y
On Tue, Oct 22, 2013 at 2:49 PM, Greg Von Kuster wrote:
> Hi Peter,
>
> Here is a new Trello card to track the progress for fixing and stabilizing
> the tool shed install and test framework. This card will evolve over the
> next few days as items are completed and new issues are uncovered that
Hey Eric,
Thanks for thinking through some of those details. I don't know if
this is an extension of that or an alternative to that - but the
Galaxy tool shed has some support for workflows and stored these in a
VCS repository (mercurial). Augmenting that to support a sort of
one-click (or coupl
Hey Damion,
Because this wasn't explicitly shown in your example e-mail, can you
verify for me that you are putting the filter elements inside of the
options element and not inside of the param element?
-John
On Wed, Oct 30, 2013 at 10:50 PM, Jennifer Jackson wrote:
> Moving this over to gala
On Thu, Oct 31, 2013 at 7:41 AM, Bjoern Gruening
wrote:
> Hi,
>
>> > Hi John & Greg,
>> >
>> > yes I can confirm that. Thanks for reproducing.
>> >
>> > Btw. should I set up one test repository for every feature (lets say for
>> > ruby and R) that will stay like it is and function as test environm
Is there a way to interact with the published workflows section of Galaxy
using only the API? Only workflows that I imported or constructed myself
show up using the get_workflows from bioblend.
Thanks!
___
Please keep all replies on the list
John, thanks for following up. I myself abashedly sent out a followup mail
which maybe didn't get to this list (from the other
galaxy-u...@lists.bx.pu.edu list). Yes indeed, I'd closed my one-liner
options tag. Problem fixed now.
Regards,
Damion
From
Hi Ira,
> Hi Bjoern,
>
> I've just done some more testing of my tool with a fresh install and a fresh
> checkout of galaxy. After install of this tool
>
> http://testtoolshed.g2.bx.psu.edu/view/iracooke/package_protk_1_2_5
>
> I have an env.sh that looks like
>
> GEM_PATH=/home/vagrant/tool
On Friday, November 1, 2013, Peter Cock wrote:
> On Tue, Oct 22, 2013 at 2:49 PM, Greg Von Kuster
> >
> wrote:
> > Hi Peter,
> >
> > Here is a new Trello card to track the progress for fixing and
> stabilizing the tool shed install and test framework. This card will
> evolve over the next few da
