Not that I am aware of, but given the run time of jobs is quite
variable it seems confusing to have Galaxy suddenly switch
focus - especially if I have another tool or visualisation open,
or am looking at a particular datafile.
However, if the user hasn't interacted with Galaxy since
pressing the
This question was cross-posted on https://biostar.usegalaxy.org/p/7619/
Adding custom tools: resolving (external ) XML entities
I'd like to replace fragments of XML code in my custom tool declaration.
My first idea was to use XML entities but it seems that the XML engine
doesn't resolve them.
Il 2014-05-19 04:47 neil.burd...@csiro.au ha scritto:
Hi,
I am currently using the reports tool to see what jobs have been
executed etc ...
When you look at the information for each job it states the time the
job was put on the queue (creation time) not the actual start time of
the job. Do
Hello Dmitry,
Sorry the delayed response. It occurs to me that data source tools may
be an alternative I should have pointed you to right away -
https://wiki.galaxyproject.org/Admin/Internals/DataSources. I am not
sure they are a perfect fit but regular tools are not a perfect fit
either.
On
Hi Emma
Have a look at
https://wiki.galaxyproject.org/Admin/Config/Access%20Control
and
https://wiki.galaxyproject.org/UserDefinedToolboxFilters
as an alternative you could also do a bad hack using dynamic_options
Regards, Hans-Rudolf
On 05/19/2014 10:38 AM, Emma Prudent wrote:
Hi,
I
Hi Greg, Dave,
I just tried to upload an updated tar-ball to the Test ToolShed and
got a red error message:
quote
Uploaded archives can only include regular directories and files (no
symbolic links, devices, etc). Offender:
/quote
Note no offending files were listed. When I double checked I had
I am working in the galaxy-dist stable branch. I select a workflow and
select Delete. An alert pops up asking if I'm sure I want to do
that. I press Cancel and the alert disappears, along with the
workflow. This shouldn't happen.
Cheers,
-Evan Bollig
Research Associate | Application Developer |
Hey Dannon,
I managed to resolve this on my own.
The postgres version is 9.1, and I'm on Ubuntu 12.04. The instance is
an OpenStack VM. It turned out that the dir contained files that were
outdated from a previous version of galaxy-dist. After I realized that
they were part of hgignore, I ran hg
Ok, great, glad you're up and running! I'll scratch this one off the list
of things to think about.
On Mon, May 19, 2014 at 4:00 PM, Evan Bollig boll0...@umn.edu wrote:
Hey Dannon,
I managed to resolve this on my own.
The postgres version is 9.1, and I'm on Ubuntu 12.04. The instance is
Hello John,
Thank you very much for the very extended response.
It seems I have enough reading to be calm for a month :-).
Thank you again,
Dmitry
On 5/19/2014 4:42 PM, John Chilton wrote:
Hello Dmitry,
Sorry the delayed response. It occurs to me that data source tools may
be an alternative
Hello all,
This just a reminder that early
registrationhttps://wiki.galaxyproject.org/Events/GCC2014/Register
for
the 2014 Galaxy Community Conference
(GCC2014)https://wiki.galaxyproject.org/Events/GCC2014 *closes
this Friday, May 23* Register early and *avoid paying 70% more for regular
Hello all,
The upcoming Galaxy release is currently scheduled for Monday, June 2. In
preparation for this release, the main Galaxy Tool Shed is now tracking the
next-stable branch and is currently running changeset 13542:11403745e7ce. The
main Tool Shed will be regularly updated with any
Hi Guys,
I tried to install flexbar from toolshed, but upon running, error said it
could
not find it.
I checked and found
idtoolshed.g2.bx.psu.edu/repos/jtilman/flexbar/flexbar/2.4/id
in the config file, but this path does not exist.
Is it that I need to install the dependency on my own? I
Yes. I'm looking to auto display the final history output when the job
finishes.
It's pretty traightforward to get the URL to display i.e.
http://'servername'/capaibl/datasets/5a1cff6882ddb5b2/display/?preview=True.
However, I don't know how to use the URL to set it on the galaxy webpage.
14 matches
Mail list logo
