Hi David.
I've not needed that workflow so haven't a solution for you and no, it
doesn't do anything with chimeric output - won't be hard to add I suspect.
There's no python wrapper - just shell script in the command segment.
It's not in an IUC main tool shed repository because it lacks a data
A colleague of mine mentioned it. I'll ask him where he got his info. Just to
clarify: do you always run STAR jobs on the same host? We are running Galaxy
in front of a batch system cluster, and so by default STAR jobs would run on
different nodes. It's not clear to me how long the memory
Hi all,
In a tool that I am writting I want to pass an input parameter value
(string) into the output file's metadata. Meaning that one of the tool
parameters is a barcode signature, 'NNWTGXN' for example. I want that
attribute to be stored somehow in the output file in order to be read by a
Hi Team,
I have a new instance of galaxy cloudman running on AWS and when I go to run
some of the tools I have installed like SAM-to-BAM it requires a reference
genome, but none is available. This is SAM-to-BAM version 1.1.4. This is the
first tool I have found this to be an issue so far.
On Fri, Sep 26, 2014 at 3:01 PM, Nikos Sidiropoulos
nikos.sid...@gmail.com wrote:
Hi all,
In a tool that I am writting I want to pass an input parameter value
(string) into the output file's metadata. Meaning that one of the tool
parameters is a barcode signature, 'NNWTGXN' for example. I
