[galaxy-dev] MarkupSafe egg missing? e.args[1].key != e.args[0].key

2014-11-17 Thread Peter Cock
Hello all, There looks to be an egg problem with the latest galaxy-central, here are excepts from a failed Galaxy install on my TravisCI test setup, https://travis-ci.org/peterjc/pico_galaxy/builds/41233860 Here's another project build with the same error: https://travis-ci.org/peterjc/galaxy_bla

Re: [galaxy-dev] Is release_2014.10.06 "official"?

2014-11-17 Thread John Chilton
The release is definitely official - many sites have upgraded and usegalaxy.org has been running it since September - I'm not sure if there will release notes or not for the October release. We have not abandoned release notes - the next release will have release notes. I think there may be one da

[galaxy-dev] Help with new PscanChIP test tool shed repository.

2014-11-17 Thread Federico Zambelli
Dear all, I've uploaded to the test tool shed a pscan_chip_test repository and I'm looking for help in testing it since it's my first time setting up a Galaxy repository. Pscan-ChIP is a motif enrichment analysis tool. The stand-alone web interface is available here: www.beaconlab.it/pscan

Re: [galaxy-dev] MarkupSafe egg missing? e.args[1].key != e.args[0].key

2014-11-17 Thread Saket Choudhary
I have had the same issue. A little debugging here: https://travis-ci.org/saketkc/galaxy_tools/builds/41209515#L84 I first thought that there was a conflict with system installed paramiko, but it is not: https://travis-ci.org/saketkc/galaxy_tools/builds/41210153#L60 A clean install of galaxy-cent

Re: [galaxy-dev] MarkupSafe egg missing? e.args[1].key != e.args[0].key

2014-11-17 Thread John Chilton
Ummm... I think it is that the VM started shipping with an incompatible paramkio. Saket I think you were using -m like it were -c? > python -m "import string" # what you had /usr/bin/python: No module named import string > python -c "import string > python -m "string" > Anyway - planemo's TravisC

Re: [galaxy-dev] MarkupSafe egg missing? e.args[1].key != e.args[0].key

2014-11-17 Thread Saket Choudhary
On 17 November 2014 11:23, John Chilton wrote: > Ummm... I think it is that the VM started shipping with an > incompatible paramkio. Saket I think you were using -m like it were > -c? > >> python -m "import string" # what you had > /usr/bin/python: No module named import string >> python -c "impor