[galaxy-dev] Missing configuration and location files automatic creation

2014-09-19 Thread Julien Seiler
Hi all, I have notice that the run.sh script is creating automatically all missing configuration and location files to make sure Galaxy can work properly at first launch. However, the script is not taking care of the actual settings of an existing universe_wsgi.ini file. As a result, if the uni

Re: [galaxy-dev] Missing configuration and location files automatic creation

2014-09-19 Thread Julien Seiler
existing galaxy.ini and then create each default config files to the location pointed by galaxy.ini. -- Julien Seiler @julozi Le 20 sept. 2014 à 03:10, Nate Coraor a écrit : > Hi Julien, > > What timing for this email - we have just made significant changes to the > default config layo

[galaxy-dev] Displaying track into UCSC

2013-03-18 Thread Julien SEILER
Hi all, We have installed a local galaxy server and we are encountering a problem when trying to use UCSC display application on private dataset. UCSC is giving us the following error message : Unrecognized format line 2 of http://.../galaxy.bed (note: chrom names are case sensitive) Curiously,

Re: [galaxy-dev] Displaying track into UCSC (update)

2013-03-20 Thread Julien SEILER
could cause Galaxy not to use the right function? Thank you in advance, Stephanie -- Stephanie Le Gras Bioinformatics engineer High throughput sequencing platform IGBMC 1, rue Laurent Fries 67404 ILLKIRCH Cedex France Tel. : +33 (0)3 88 65 32 73 Tel. Solexa : +33 (0)3 88 65 32 97

Re: [galaxy-dev] Displaying track into UCSC (update)

2013-03-22 Thread Julien SEILER
an you update your Galaxy instance and see if the issue is resolved for you? Thanks for using Galaxy, Dan On Mar 20, 2013, at 4:53 AM, Julien SEILER wrote: Hello Carl, We are using galaxy-dist on revision a4113cc1cb5e. When we talk about private dataset, we mean datasets that have been uploaded

[galaxy-dev] Dataset appears as running job in history when changing datatype

2013-06-26 Thread Julien SEILER
been changed and if we refresh the history manually, the dataset appears in green again. Is anyone experiencing the same issue ? Regards, Julien -- Julien Seiler IGBMC Directeur des systèmes d'information Email : julien.sei...@igbmc.fr Tel : 03 88 65