Hi,
This is my first Galaxy installation setup so apologies for stupid
questions. I am setting up Galaxy on a Cluster running Torque as the
resource manager. I am working through the documentation but I am unclear
on some things:
Firstly I am unable to find : *start_job_runners *within the
univer
line 1691, in _execute_context
context)
File
"/scratch/sysusers/galaxy/galaxy-dist/eggs/SQLAlchemy-0.7.9-py2.6-linux-x86_64-ucs4.egg/sqlalchemy/engine/default.py",
line 331, in do_execute
cursor.execute(statement, parameters)
OperationalError: (OperationalError)
search Computing Support
> > Office of Information Technology
> > http://www.oit.uci.edu/rcs/
> >
> > University of California, Irvine
> > www.ics.uci.edu/~aebrenne/
> > aebre...@uci.edu
> >
> > On Thu, Aug 8, 2013 at 4:12 AM, Jurgens de Bruin
> w
/meilleures salutations/
distinti saluti/siong/duì yú/привет
Jurgens de Bruin
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ror: code is 401 != 200
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distinti saluti/siong/duì yú/привет
Jurgens de Bruin
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I would I check to see if a job is passed on to torque via drmaa?
Any help would be appreciated
--
Regards/Groete/Mit freundlichen Grüßen/recuerdos/meilleures saluta
tyle job configuration. They should also
> only be used if you are attempting to set up "run jobs as the real user"
> job running capabilities.
>
> > Further more when I want to kill my jobs by clicking
> in galaxy web,the job keeps on running in my
> background.I do
. Error: [Errno socket error] [Errno
101] Network is unreachable*
On 13 August 2013 16:53, Jurgens de Bruin wrote:
> I am totally lost on what is happening now, I have Galaxy running but jobs
> are not being run:
>
> This is my setup:
> torque:
> qmgr -c 'p s'
> #
in import galaxy.model # need to import model before sniff to
resolve a circular import dependency*
Any help would be appreciated
--
Regards/Groete/Mit freundlichen Grüßen/recuerdos/meilleures salutations/
distinti saluti/siong/duì yú/привет
Jurgen
interactiveOrCluster
*
I can submit jobs to the cluster so I know that part is working. Any help
would be appreciated.
--
Regards/Groete/Mit freundlichen Grüßen/recuerdos/meilleures salutations/
distinti saluti/siong/duì yú/привет
Jurgens de Bruin
ftp/%U','/bin/bash'
FROM galaxy_user WHERE email='%U'"
# Create log
ExtendedLog /var/log/proftpd.log read,write
Include /etc/proftpd/modules.conf
AuthOrdermod_sql.c
SQLDefaultGID 601
SQLDefaultUID 600
I have added use_pbkdf2 = false to
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