[galaxy-dev] Loc file configuration question

2012-05-08 Thread Raja Kelkar
I have two questions that pertain to a local install of galaxy: 1. I have been having trouble getting the “fetch sequences” à “extract genomic DNA” tool to work. Can someone identify the specific *.loc file that needs to have the info about the location of the genome sequence files? I get th

Re: [galaxy-dev] Loc file configuration question

2012-05-09 Thread Raja Kelkar
t; > The only gtf/gff files associated with this tool would be datasets from > the history, so there are no gtf/gff data to stage before using the tool. > To have the tool use a particular genome, set the query dataset (interval, > bed, gtf) to have the same database identifier as you u

Re: [galaxy-dev] Loc file configuration question

2012-05-10 Thread Raja Kelkar
eparated and not spaces (they >> are spaces below, but that could be a copy and paste artifact)? >> >> >> Thanks for using Galaxy, >> >> Dan >> >> >> On May 9, 2012, at 9:45 AM, Raja Kelkar wrote: >> >> Hi Jen, >>> >>&g