Hi,
We are in the process of deploying a small Galaxy server here at Texas
AM University
I am a GNU/Linux kind of guy
My IT people want to use an SMB-mounted drive share as a backup destination
I am concerned that this might impact the performance of the server as
in my mind the equation is as
Hi,
I hope this is the right place to ask,
I am trying to rsync from:
rsync -avzP rsync://datacache.g2.bx.psu.edu/indexes/
and I am getting the error:
@ERROR: chroot failed
rsync error: error starting client-server protocol (code 5) at main.c(1534)
[Receiver=3.0.9
I know I can rsync to any
Hi,
As Admin, I uploaded a set of files from filesystems paths
Uploading is successful but when I try to make the datasets public I get
the following error:
Internal Server Error
Galaxy was unable to sucessfully complete your request ==By The
Way...NOTE how sucessfully is misspelled!!
URL:
Hi,
I starting getting this error since late galaxy update
I get data from UCSC Main (local), but when I click display at UCSC main
I get:
Not Found
The requested URL /cgi-bin-root/hgTracks was not found on this server.
Please help
Thanks
--R
People,
I successfully installed NCBI_Blast_Plus from the toolshed
The tool, however, failed to work giving the following error:
Fatal error: Exit code 255 ()
Error: NCBI C++ Exception:
/usr/local/galaxy/galaxy-dist/database/tmp/tmpwL5OFq/ncbi-blast-2.2.26+-src/c++/src/corelib/ncbiobj.cpp,
On Thu, Aug 1, 2013 at 6:49 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Thu, Aug 1, 2013 at 12:38 PM, Rodolfo Aramayo raram...@tamu.edu wrote:
People,
I successfully installed NCBI_Blast_Plus from the toolshed
The tool, however, failed to work giving the following error:
Fatal error
On Thu, Aug 1, 2013 at 8:40 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Thu, Aug 1, 2013 at 1:41 PM, Rodolfo Aramayo raram...@tamu.edu wrote:
On Thu, Aug 1, 2013 at 6:49 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Thu, Aug 1, 2013 at 12:38 PM, Rodolfo Aramayo raram...@tamu.edu
Dear Peter,
APOLOGIES for the delayed response
Please see below for details..
On Thu, Aug 1, 2013 at 8:51 AM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Thu, Aug 1, 2013 at 2:47 PM, Rodolfo Aramayo raram...@tamu.edu wrote:
On Thu, Aug 1, 2013 at 8:40 AM, Peter Cock p.j.a.c
to the
ncbi_blast_plus repository on the manage installed repositories page? If
'Deactivate or uninstall' is available, can you try uninstalling again, and
see if that functions correctly?
--Dave B.
On 8/1/13 07:38:22.000, Rodolfo Aramayo wrote:
People,
I successfully installed NCBI_Blast_Plus
repository on the manage installed repositories page? If
'Deactivate or uninstall' is available, can you try uninstalling again, and
see if that functions correctly?
--Dave B.
On Aug 5, 2013, at 2:35 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Mon, Aug 5, 2013 at 6:50 PM, Rodolfo Aramayo
:
./bioinfosoft/galaxy_dependencies/blast+/2.2.26+/devteam/ncbi_blast_plus/9dabbfd73c8a/bin/
is empty!
Should I repopulate it with the one I have in my backup??
Thanks
--Rodolfo
--Dave B.
On 8/1/13 07:38:22.000, Rodolfo Aramayo wrote:
People,
I successfully installed
Hi,
I have a 80 core/1TB RAM Dell server.
In order improve Galaxy performance I modified the universe_wsgi.ini
file so as to improve the Scaling and Load Balancing
as follows:
# Use a threadpool for the web server instead of creating a thread for each
# request.
use_threadpool = True
# Number
You are very welcome
So...what happened??
Thanks
--R
On Tue, Aug 6, 2013 at 9:26 AM, Greg Von Kuster g...@bx.psu.edu wrote:
Hello Rodolfo,
The following issue is resolved in 10319:61de03c05cf6 - thank for reporting
this.
Greg Von Kuster
On Aug 5, 2013, at 3:50 PM, Rodolfo Aramayo raram
On Thu, Aug 8, 2013 at 1:31 PM, Nate Coraor n...@bx.psu.edu wrote:
On Aug 5, 2013, at 6:23 PM, Rodolfo Aramayo wrote:
Hi,
I have a 80 core/1TB RAM Dell server.
In order improve Galaxy performance I modified the universe_wsgi.ini
file so as to improve the Scaling and Load Balancing
It worked like a charm
Thanks
--R
On Fri, Aug 9, 2013 at 12:32 PM, Nate Coraor n...@bx.psu.edu wrote:
On Aug 9, 2013, at 1:16 PM, Rodolfo Aramayo wrote:
Dear Nate,
Thanks
Just to be sure I understand this correctly
I now have in my 'universe' file the following:
#
# HTTP
Hi,
Regarding the error I experienced with
[galaxy-dev] Error running oasesoptimizer rev. 53e887dda799
(konradpaszkiewicz) on Galaxy fd4113962c32+ (stable)
Two things:
FIRST
The error I reported, in short, it was my fault as I failed to to set up the:
cmdline =
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