[galaxy-dev] unable to add tools in tool_conf.xml

2012-03-08 Thread Sivasangari NANDY
Hi friends, I've got a problem, i'm not able to add a tool in ttol_conf.xml. Actually i can see one tool that i've added but when i put the second Galaxy doesn't take it into account : My paster.log gives that : galaxy.tools ERROR 2012-03-08 16:07:57,849 error reading tool fro

Re: [galaxy-dev] unable to add tools in tool_conf.xml

2012-03-08 Thread Sivasangari NANDY
from a choosen one rec_expression.pl $input $output Yea i think i must replace this line : and change the type to text maybe, i'll test it in few mins (some problems for the moment) and give you the answer. n.b : no Peter, i've just forgot to put the list email.

Re: [galaxy-dev] unable to add tools in tool_conf.xml

2012-03-08 Thread Sivasangari NANDY
Thanks to bjoern and Peter, it's working now.I've juste change the type string to text. regards, Siva > Subject: Re: [galaxy-dev] unable to add tools in tool_conf.xml > From: bjoern.gruen...@pharmazie.uni-freiburg.de > To: nsi...@hotmail.com > CC: galaxy-dev@lists.bx.psu.edu > Date: Thu, 8 M

[galaxy-dev] Change "Manage data Libraries"

2012-03-14 Thread Sivasangari NANDY
Hello everyone, I'm trying to change some options in the Manage data Libraries.Especially in the Server Directory, by clicking the "Upload directory of file" in Upload option. So I've changed "universe_wsgi.ini" file and add for library_import_dir my directory. The problem is that I can see o

Re: [galaxy-dev] Change "Manage data Libraries"

2012-03-21 Thread Sivasangari NANDY
Hello, Do you mean a symlink ? > From: carlos.borr...@gmail.com > Date: Wed, 14 Mar 2012 12:57:29 -0400 > Subject: Re: [galaxy-dev] Change "Manage data Libraries" > To: nsi...@hotmail.com > CC: galaxy-dev@lists.bx.psu.edu > > On Wed, Mar 14, 2012 at 6:07 AM, Siv

Re: [galaxy-dev] Change "Manage data Libraries"

2012-03-22 Thread Sivasangari NANDY
"maize" or > "blastdb_loc" directories in the "Server Directory" option when > uploading a directory of files. > > Hope it helps, > Carlos > > On Wed, Mar 21, 2012 at 11:46 AM, Sivasangari NANDY > wrote: > > Hello, > > > >

[galaxy-dev] dotmatcher error

2012-03-26 Thread Sivasangari NANDY
Hi everyone, A little problem with the dotmatcher tool in Galaxy from Emboss.I've got this message : Tool execution generated the following error message:Devices allowed (with alternative names) are:- ps (postscript) hpgl hp7470 hp7580 meta cps (colourps) tek (tek4107t) tekt (tektronics) none (