Hi,
I've been having trouble running a local instance of Galaxy on a Mac Pro after
upgrading to OS X 10.7 (Lion). My Python version is 2.7.1 and Mercurial is
1.9.1 for MacOS X 10.7. I don't have any MacPorts installed.
The error I see after running the startup script is pasted at the end of t
__
From: Nate Coraor [n...@bx.psu.edu]
Sent: Friday, September 02, 2011 1:16 PM
To: Whyte, Jeffrey
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Galaxy egg fetching error? Mac OS X 10.7 (Lion)
Whyte, Jeffrey wrote:
> Hi,
>
> I've been having trouble running a local in
file or
directory
[~] myuserid 01:34 PM >
Jeff
From: Nate Coraor [n...@bx.psu.edu]
Sent: Tuesday, September 06, 2011 10:18 AM
To: Whyte, Jeffrey
Cc: galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Galaxy egg fetching error? Mac OS X 10.7 (Lion)
for Mac OS X 10.6 Snow Leopard instead of 10.7 Lion. (?)
Thanks,
Jeff
On Sep 6, 2011, at 10:18 AM, Nate Coraor wrote:
> Whyte, Jeffrey wrote:
>> Thanks for the information, Nate.
>>
>> I installed Python as you described, and the error I get now is pasted
>> below
That worked, Nate!
Thank you very much. I really appreciate your efforts.
Jeff
From: Nate Coraor [n...@bx.psu.edu]
Sent: Wednesday, September 07, 2011 10:33 AM
To: Whyte, Jeffrey
Subject: Re: [galaxy-dev] Galaxy egg fetching error? Mac OS X 10.7 (Lion
Anton,
If a user is running a multi-core machine, a simple method to speed up FASTQ
-Groomer is to first split the original FASTQ file (e.g. into 10 smaller files
if you've got a 12-core machine), run FASTQ-Groomer on each file concurrently,
then join the 10 files back together. This allows fo
Hi Everyone,
I'm having trouble getting some of the tools to work on my local installation
of Galaxy on a Mac (OS X version 10.6.7). The instructions on the GetGalaxy
wiki are clear, and I was able to download and install from the anonymous
Mercurial repository. Galaxy starts up and runs jus
se the
latter where I have one bashrc script that sets the environment for all users
and by calling this one from galaxy/run.sh I make sure the environment for
Galaxy is exactly the same as for my (command line) users.
Cheers,
Pi
On Apr 22, 2011, at 5:25 PM, Whyte, Jeffrey wrote:
Hi Everyon
ome of these tools can be installed easily on Mac OS using MacPorts
> port search gnuplot
> Of course, you have to install MacPorts first.
> Florent
>
> On 23/04/11 01:25, Whyte, Jeffrey wrote:
>> Hi Everyone,
>>
>> I'm having trouble getting some of the t
t a
> gnuplot terminal and type 'set terminal' for a list, do you see png as a
> supported terminal? If not, you should probably install libpng first and
> re-compile gnuplot. If you install gnuplot via MacPorts though it will
> probably already take care of this dependenc
pported terminal? If not, you should probably install libpng first and
> re-compile gnuplot. If you install gnuplot via MacPorts though it will
> probably already take care of this dependency and install it for you...
>
> Cheers,
>
> Pi
>
>
> On Apr 24, 2011, at 3:57 AM, W
de Mac's sed, the GNU sed will
> probably be installed as "gsed"), and modify the shell script (from "sed" to
> "gsed").
>
>
> On Apr 27, 2011, at 19:15, "Pieter Neerincx"
> wrote:
>
>> Hi Jeff,
>>
>> On Apr
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